Stylophora pistillata (Smooth Cauliflower Coral): 111341824
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Entry
111341824 CDS
T05774
Name
(RefSeq) DNA ligase 4-like isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
spis
Stylophora pistillata (Smooth Cauliflower Coral)
Pathway
spis03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
spis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
111341824
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spis03400
]
111341824
Enzymes [BR:
spis01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
111341824
DNA repair and recombination proteins [BR:
spis03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
111341824
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
DNA_ligase_IV
RNA_ligase
mRNA_cap_enzyme
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
111341824
NCBI-ProteinID:
XP_022804578
EnsemblRapid:
LOC111341824
LinkDB
All DBs
Position
Unknown
AA seq
920 aa
AA seq
DB search
MAGVSSAEVATQVPFYDVCALLEKIAGTTGTEKKKRILASFVKSWREAHAKLHGTSKTTD
SFHSGMRLLLPHLDKERGAYGMKEVVLAKYYIEILSIGKDSADGRKLLNYRAPKNVKQDS
VADFASVAYFVLRNRCPEKGSLKIDQVNKYLDQLASANIDHKRDEAKKALQLLLRNTSAL
EQKWLIRIIFKELKIGLSENSVFNVYHPDAMELFGVCNSLPKVCLDLHDPSIRMNEAEMS
LFSPFRPMLAERKHISEVENVMNNQSFYIETKIDGERMQLHKDKDSFMYFSRSANEYTHV
FGANSSSGVLTPHIAGCFSSSVHSCILDGEMVVIDPKTDTWLSKGMNVDVKSLTAYENDQ
GLHPCFIVFDILIINDKKLANVPLNERIKSMEKMLKPKPGYLQFVERQEAISNEDVVKAL
NSAIDKREEGLVVKSPSSVYKPNSRSGSGWVKIKPEYVDSLSDELDLVIVGGYFGVGRRS
GMTSHFMCAVAVPSNIPGEHPKVFHSFCKVGSGYTMNELRELDQQLRPHWNAFDTKKPPE
HIILAPGFKEKPDVWIDPSKSKIVQIKASEIITSDKFKTGVTLRFPRLEAVRTDKMWYEC
LDLNELTRLKSVAQGKLTYQHANVGQKSEPAKKRRREAARVEQSRTVAKHFKPADVSSVE
EVSQMFRDKEFYIVNGPSSHAKAVLEKKVAENGGTLTQNPGSDTFCVVAERINVRVKNII
SQNKYDVVKASWLIKCLESGELEPWIPSDMFHSSSRTADKFAEEFDQHGDSYTEFATAES
LRKVFNNVQSKNSAVPLSTDEILEISQRYFSDNSPFGLFKHCRVYLDQFTVIGDKSTGIP
NCSLELIGLKLRIYGAQISDSFDSKVTHVVFDERDLCRFTELQRRTQEREVKQHLVTLVW
VTQSIQAEKLLPERHFRPIS
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagtttcatccgcagaagtagcaactcaggttccgttttatgatgtatgtgct
ctgttagaaaagatagcaggcacaacaggaactgaaaagaagaagagaatcttggcatca
tttgttaaatcgtggagagaagcgcacgctaagttgcatggaacttcgaaaacaactgac
tcattccactctggtatgcgcctgttgcttcctcatcttgacaaagaacgaggagcttat
gggatgaaggaggttgttcttgcaaaatattatattgaaatattaagtattgggaaggac
tctgctgatggccgtaaactgctgaattacagagcacccaaaaatgttaaacaggattct
gtggctgattttgcaagtgttgcttactttgttttgagaaatagatgtcctgaaaaagga
agtttaaagattgaccaagtaaacaagtaccttgaccagctcgcctctgcaaatattgat
cataaacgtgatgaagccaagaaagctttgcagttactgctacgtaacacaagtgctctg
gaacagaaatggttaatcaggataattttcaaggaactgaagattggcctcagtgagaac
tctgtatttaatgtttatcatccagatgcaatggaactgtttggagtctgtaacagtcta
cccaaggtttgtttggatcttcatgatcccagcattagaatgaatgaagcagagatgtct
ttgttctcaccatttcgaccaatgttagctgaaagaaaacacatcagtgaggtggagaac
gtaatgaacaatcagtcattttatatagaaaccaaaatagatggtgagagaatgcagctt
cataaagacaaagacagttttatgtacttctcaagaagtgcaaatgaatacactcatgta
tttggtgcaaactcatcctctggagttcttacacctcacattgctggttgcttctcaagc
tctgtacattcatgtatcctggatggagaaatggttgttattgatccaaagacagacaca
tggctgtctaagggaatgaatgttgatgtgaaatccttaaccgcttatgaaaacgatcaa
ggtcttcacccttgcttcattgtgtttgatatcctaatcataaacgataaaaaactggca
aatgttcctttgaatgaaagaatcaaatccatggaaaaaatgctgaagccgaagcctgga
tatcttcagtttgttgagagacaagaagccatttctaatgaagacgtggtgaaagctctt
aactctgcaattgacaagagggaagaaggcttggttgtgaagtcaccatcctctgtttat
aaaccaaactcaagaagtggcagtggctgggtgaagattaaaccagaatatgtcgacagc
ctcagtgatgagctggatcttgtcattgttggtggctattttggagttgggcgccgtagt
ggaatgacatctcattttatgtgtgctgtggcagttccttcgaacattccgggtgaacat
cctaaagtgttccactctttctgtaaggtgggatctggttacactatgaatgagttgcgt
gaactggaccaacagttgcgtccacactggaatgcatttgatactaaaaagcctccagaa
catattattctggcccctgggttcaaggaaaaacctgatgtgtggattgatccgtccaaa
tcgaagatagttcagattaaagcttcagaaatcattacatcagacaagtttaaaactggt
gtgactcttcgctttccaaggctggaagccgttcgcactgacaagatgtggtacgagtgt
ttggaccttaacgaactgaccaggctgaaatcggtggcacagggaaagctcacataccaa
catgcaaatgtaggacagaaatctgaaccagccaagaaaagaaggcgagaggctgcacgg
gttgaacaatcacggacagtggccaaacatttcaagccggcggatgtgtcatcagttgaa
gaggtttcgcaaatgttccgggataaggaattttatattgtcaatggtccttcctcgcat
gccaaggctgtcttagaaaaaaaagttgccgagaatggaggcacattgactcagaaccct
ggttctgacactttctgtgttgtggcggagagaatcaacgttagagttaagaatatcatc
agtcagaacaaatacgatgtcgtgaaggcatcttggcttattaaatgcttggaaagtggc
gagcttgagccatggattccaagtgatatgtttcattcttcgtcccgaactgcggataaa
tttgccgaggagtttgatcaacatggagacagttacacagagtttgccacagctgagtca
ctcagaaaagtgtttaacaatgttcaaagcaagaactcagcagttcctctttcaaccgat
gaaatactggaaatatctcaacgttatttttccgataactcgccttttggtttgttcaaa
cattgcagagtgtaccttgatcagttcactgtgattggggataaatcaacgggaattcct
aattgcagtttggagcttattggtttgaaactgcgcatttacggtgcacagatcagcgac
agttttgacagcaaagtgacacatgtcgtcttcgatgaaagggacctttgtcgcttcaca
gagcttcagagaagaacgcaagaaagagaagtaaaacaacatcttgttacgttagtctgg
gtcacgcaatcaattcaagcggaaaaacttctacctgaaagacatttcaggccaatttca
taa
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