Shewanella pealeana: Spea_1543
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Entry
Spea_1543 CDS
T00606
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spl
Shewanella pealeana
Pathway
spl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Spea_1543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spl03400
]
Spea_1543
Enzymes [BR:
spl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Spea_1543
DNA repair and recombination proteins [BR:
spl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Spea_1543
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
ERCC3_RAD25_C
MCD_N
Peripla_BP_4
Motif
Other DBs
NCBI-ProteinID:
ABV86868
UniProt:
A8H2T1
LinkDB
All DBs
Position
complement(1877030..1880503)
Genome browser
AA seq
1157 aa
AA seq
DB search
MNSFSVLTPPAVKSAKLAQTLCTLGGAAQALTIANIAKQHLGVTLVVTADTPNAISLETE
LSYLLSEQSIPIWLFPDRETLPYDSFSPHQDLVSQRLEALSRIPQAQHAVVIVPITTLMV
RLPPQSFLTGNVLMLEKGDKYRLMDVREQLINTGYHVVEQVYEHGEFAVRGSIIDIFPMG
SSQPFRIELFDDEVETIRHFDPETQRSSKEINAIRLLPAKEFPTDDAAIEGFRQRYRRRF
EVLVKEPGSIYQMVSKKTMPAGIENYLPLFFDETSTLFDYLPSNTQLITLGDIEAATHSH
LHEVEVRYEDRRVDPLRPLLTPQELYLLTEQIFSAFKGYPRFGLKDEAYTGTAAHAKASK
LPEIGANHKLKQPLAELEKYAALGDRMLFSAESEGRREALLELLSKINIKPKLFNHFDEF
VASKAKVGLIVSPLAQGCIIEKKTGGKFSLICETELFGQRISQRRRRDKQRQISSDALVK
NLAELKVGQPIVHLDHGVARYQGLETLDTGGLVAEYLVLEYSGGDKLYVPVAALNLISRY
SVGPDEEATLNKLGNESWAKAKKKAVEKIRDVAAELLDVYARRQARPGEACRIDLEEYAQ
FANSFPYEETVDQETAIEAVLEDMRSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQV
AILVPTTLLAQQHYENFKDRFADWPFKIEVMSRFKTAKEQTQVMKELLDGKVDIVIGTHK
LLQSEAKFENLGLLVIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRD
LSIIATPPAKRLAVKTFVREYDEATIREALLREILRGGQVYFLHNSVETIEKRAAEISEL
LPEARVVTAHGQMRERELERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIVIERADNFG
LAQLHQLRGRVGRSHHQAYAYLMTPHPKSMTKDARKRLEAIGALEDLGAGFMLATQDLEI
RGAGELLGDEQSGHISKIGFTLYMEMLEDAVKSLKQGKEPSLNQMLRHQCEVELRIPALL
PEDYVGDVNIRLSLYKRIANCETAKALDEMKVELIDRFGMLPDATKNLMEMTLYKHLATQ
LGLRKIEMHAKGGSIEFGENNKVDPTFIIGLLQSQPQVYRMDGPNKLKFAMPSETAKDRL
ALLKLLIEQLFQHRLGE
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgaattctttttctgtattgactccaccagcggtcaagagtgccaaactggcccaaacg
ctgtgtacactgggcggcgcggcacaagcgctaaccatcgcgaatattgctaagcaacat
ctaggggtgaccttagtggtgaccgcggatacgcctaacgcaatcagcctagaaactgag
cttagctacctgctcagtgagcaatcaataccgatctggctttttcccgatagagaaaca
cttccctacgacagcttctcaccgcaccaagacttagtctcacagcgacttgaagcgtta
tcgcgtattcctcaggcgcaacacgccgttgtcattgtcccgatcactacactcatggtg
cgcctgccgccacaatcgttcctaacaggtaacgtgttgatgctggaaaaaggtgacaaa
taccgcctaatggatgttcgtgaacagctcattaacactggctatcatgtggttgagcaa
gtttatgaacatggcgaatttgccgtgcgtggctctatcatcgatattttccctatggga
tcgagccaaccctttagaatcgagttattcgacgatgaagtggaaaccattcgacatttc
gatccagaaactcagcgctcgagtaaagagataaatgcaattcgtctgttaccggcgaaa
gagttccctaccgatgacgcggcgattgaaggctttagacaaagataccgccgccgcttc
gaggtattagtcaaagagcctggctcgatttatcagatggtcagtaagaagaccatgccg
gccggtattgaaaactatctgccactgttttttgatgagacctcgactctgtttgattat
ctgccgagtaatactcagctgatcaccctaggcgatattgaagcggcgactcactcacac
cttcatgaagtcgaagtgcgttatgaagacaggcgtgtcgacccattaaggccgctactg
acgccacaagagttatatttgcttaccgagcagatcttctcagcttttaaaggctatcct
cgctttgggcttaaagatgaagcctacacaggcacggcagcccatgctaaagccagtaag
ttaccggaaattggcgcaaaccataaactcaaacagccgttagccgagctggaaaaatac
gcagcacttggcgatagaatgttatttagcgccgaatctgagggacgccgcgaagcgctt
ttagagctacttagcaagatcaacattaagcctaagctgtttaatcacttcgacgagttt
gtagccagcaaggcaaaagtaggactgatagtgtctcctcttgctcaaggctgcatcatt
gagaagaaaaccggcggcaagttcagtttaatttgtgaaactgagctatttggtcaacgg
atctcacagcgtcgccgccgtgataaacagcgtcagatcagctcagatgctctggttaaa
aacttggccgagctcaaagtgggtcaacctattgttcacttagatcatggtgtagcgcgc
tatcaaggtttagaaaccttagatactggcggcttagtcgccgagtatttggtgcttgaa
tactcaggtggcgataagctgtatgtgcccgtagcagcacttaatttaatcagccgttat
agcgttggtcccgatgaagaggcgacgctcaataaactcggtaatgaaagctgggctaag
gccaagaaaaaagcggttgagaagattcgcgatgtcgccgccgagctactggatgtctac
gctcgcagacaagcaagacccggtgaagcttgtcgaatcgacctagaagagtacgcgcag
tttgccaatagctttccctatgaagagacagttgaccaagagactgccatcgaagctgtt
ctggaagatatgcgctcacctacagccatggacagactggtttgtggtgatgtgggcttt
ggtaagaccgaggttgccatgcgcgccgctttcgtcgcggtaaacgatggtaaacaggtc
gccattttagtgcctactaccctactcgctcagcagcattacgagaactttaaagacaga
tttgccgactggccattcaagattgaggtaatgtcgcgctttaagactgcgaaagagcag
actcaagtgatgaaagagctgctcgatggtaaagtcgatatcgtgatcggtactcataaa
ctgctgcagtctgaggccaagtttgaaaacttaggcttgctagtcatcgatgaagaacac
cgttttggggtaagacagaaagagaagattaaggcgctcagagccaatgtcgatatttta
accttaaccgccacgccaatcccacgtaccttgaatatggcaatgtcgggcatgcgtgat
ctgtcgattatagccactcctccggctaaacgactcgctgtcaaaaccttcgttagagaa
tacgatgaagccaccattcgtgaagctttgcttcgtgagatcttaaggggtggccaagtc
tacttcctgcacaatagcgtcgaaaccatcgaaaaacgcgcggctgagataagcgaactc
ctgcctgaagcgcgagtagtgacagcccacggtcagatgcgtgagcgtgagcttgagcga
gtaatgtcagatttttatcatcaacgctttaacgtgttggtgtgtaccaccatcattgaa
accggtatcgacgtgccatcggccaataccatagtgattgagcgtgccgataactttggt
ctggctcagttgcatcagttacgtggccgtgtaggacggtctcatcatcaagcctatgct
tatttgatgacgcctcatccaaaaagtatgaccaaagatgcccgcaagcgtctagaagcc
atcggtgcattagaagatctcggtgcgggctttatgcttgcaacccaagacttggaaatt
cgcggcgcaggcgagctgcttggcgatgaacaaagtggtcatatctccaagattggtttt
accctctacatggaaatgttagaagatgcggtgaaatcacttaagcaaggtaaagagccg
tcgctaaaccagatgctgcgtcatcaatgtgaagtcgagctgcgaattcctgcgctactg
cctgaagattatgtgggtgacgtgaatattcgtctatctctgtataagcgaattgctaac
tgcgaaaccgcaaaagcgctcgatgaaatgaaagttgaattgattgaccgcttcggtatg
ttacccgatgcgactaagaatcttatggagatgacactttataagcacttggccacacag
ttaggcttaagaaaaatcgaaatgcacgctaaaggtggtagtatagagttcggtgaaaac
aataaggttgatccaaccttcatcatcggtttgctacagagccagccccaagtatatcga
atggacggccccaataagctaaaatttgcaatgccttctgaaacagcgaaagacaggctc
gcactacttaaactgttaattgagcagttgtttcaacatcgtcttggagaataa
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