Sulfuriferula plumbiphila: SFPGR_19710
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Entry
SFPGR_19710 CDS
T06621
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
splb
Sulfuriferula plumbiphila
Pathway
splb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
splb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SFPGR_19710 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
splb03400
]
SFPGR_19710 (mfd)
Enzymes [BR:
splb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SFPGR_19710 (mfd)
DNA repair and recombination proteins [BR:
splb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SFPGR_19710 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BBP04549
LinkDB
All DBs
Position
1905996..1909400
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AA seq
1134 aa
AA seq
DB search
MLFNQPLPSPGQRVRLPPLTGSADALALAELAGLARPLVVLTANALDAQRLLEEIRWFAP
NLKTNLLPDWETLPYDHFSPHQDLVSERLATLYQISQSQCDAAIVPVTTALYRLAPPAYL
GAYTFFLKQGQKLDLNALRGQMTLAGYTAVSQVISPGEYSVRGGLLDLFPMGSPLPYRID
LFDDEIETIRTFDVDTQRSIYPVNEIRLLPAREFPLDEAGIARFRENFRDRFEGDASKRQ
LYKDVSNGLAPAGIEYYLPLFFEATASLFDYLPDNALLCLHGNVEAAAQDFWRDTESRYK
LLRGDPQRPLLPPADLFLSVDALFGGLKGYPRVELSQGDTEGGSTRPLPKLEVERRADDP
LHRIKDFIRRFSGRVVLLAESLGRRETMAQYFAEYGLKPTLCEDYQSCMVQAARLLLGVA
PLGHGFILEADIPSAFVTETELYATTVRARSRDGRRSQVDGMLRDLSEVKVGDPVVHADH
GIGRYLGLISMDPGEGETEFLLLEYAGNDKLYVPVSQLHLIGRYSGASPESAPLSRLGSG
QWEKAKRRAMQQARDTAAELLNLYARRAAREGHAFTLRPHDYEAFAEGFGFEETPDQAAA
IQAVIADLCTAKPMDRLVCGDVGFGKTEVALRAAFVALMDGRQVAVLVPTTLLAEQHFQT
FSDRFSDWPVKIAELSRFRSAKEIGQALAGLAEGRIDIVIGTHKLLQKDMVFKNLGLVII
DEEHRFGVRQKEQMKVLRAEVDVLTLTATPIPRTLAMSLEGIRDFSVIATAPQKRLAIKT
FVSRYSDGVIREAVLRELKRGGQVYFLHNEVETILNMEAKLAKLLPEARIRVAHGQMPER
ELEHVMRDFHQQHVNVLLCTTIIETGIDIPTANTIIMNRADKFGLAQLHQLRGRVGRSHH
QAYAYLLTPEEEALTPAAKKRLEALQTMEDLGAGFYLAMHDLEIRGAGEVLGDSQSGSMQ
EIGFSLYNDMLNHAVAALKKGIEPDMNQPLGVTTEINLHTPALLPDSYCGDIHERLVLYK
RFANCSSSDELDDLHAELVDRFGLLPEPAQALQESHRLRLLAKPLGIAKLDASSEAISIQ
FVPNPPINPARIIELIQTRRNFKLAGQNRLRVTVAAPTLANRVDNIRKLFKDLS
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atgcttttcaatcagccgctcccctcccctggacaacgcgtccgcctgccgccgctgacc
ggctctgccgatgcactggcgctggccgagctggccgggctggcgcgcccgctggtggtg
ctcaccgccaacgccctggacgcccagcggctgctggaggaaatccgctggttcgcgccg
aatctgaaaacaaacctgctgccggactgggaaaccctgccttacgaccatttttcaccg
catcaggatctggtttccgaacgtctggccacgctctaccagatttctcaaagccagtgc
gatgcggccatcgtaccggtgaccacggcgctgtaccgtctggcgccacccgcctatctg
ggtgcttatacgttttttctcaaacaaggccagaagctggatttaaacgcactgcgcggg
cagatgacactggccggctacaccgccgtgagccaggtcatttcccccggcgaatacagc
gtgcgcggcggcctgctggatttgttcccgatgggcagcccgctgccgtatcgcattgac
ctgttcgacgatgaaatcgagactatccgcacctttgacgtggatacccagcgcagcatc
tacccggtgaatgaaattcgcctgttgccggcgcgcgaatttccgctggacgaggccggt
attgcacgcttccgcgaaaatttccgcgaccgtttcgagggcgacgcctccaagcgccag
ctctacaaggacgtgagcaacggtctggcgccagcgggcatcgagtattatctgccgctg
tttttcgaggccaccgccagcctgttcgattacctgccggacaatgccctgctctgcctg
cacggcaatgtggaggccgccgcgcaggatttctggcgcgacaccgaatcgcgctacaag
ctgctgcgcggcgatccgcagcgacctttgttgccgcccgccgacctgtttctttcagta
gacgcactgttcggcggactgaaaggctatccgcgcgttgagctcagccagggcgatacc
gaaggcggtagcacgcgcccgctgcccaagctggaagtcgaacgccgcgccgacgatccc
ttgcaccgcatcaaggatttcatcaggcgcttttcaggccgggttgtgctgctggcggag
agcctgggacggcgcgaaaccatggcgcagtatttcgccgaatacggactcaaacccacg
ctgtgcgaggattaccagagctgcatggtacaggctgcccgcctcttgctgggcgttgcc
ccgcttggtcatggctttattcttgaagcagatatacccagcgccttcgtcaccgagacc
gaactgtacgccaccacggtgcgtgcgcgcagccgcgacggacgccgcagccaggtggac
ggcatgttgcgcgacctgtccgaagtcaaggtgggcgacccggtggtgcacgccgaccac
ggaatcgggcgttatcttggtctcatcagcatggatccgggtgaaggcgagaccgaattt
ctgttgctggaatatgcaggcaacgacaagctttacgtgccggtgtcgcaactgcatctg
atcgggcgttacagcggcgcgtcgcccgaatccgcgccgttgtccaggctcggcagcggc
cagtgggaaaaagccaagcgccgcgccatgcagcaggcgcgcgacactgcggccgagctg
ctcaatctgtatgcgcggcgcgcggcgcgcgagggccatgcgtttacgctcagaccgcat
gattacgaggcgtttgccgaaggcttcggttttgaagaaacgcccgaccaggccgccgcg
attcaggcggtgattgctgacttgtgcacggccaaaccgatggataggctggtgtgcggt
gatgtgggtttcggcaaaaccgaggtcgcgttgcgcgctgcatttgtggcgctgatggat
ggccgccaggtcgccgtactggtacccaccacgctgctcgccgagcaacatttccagact
ttttccgaccgcttttccgactggccggtaaaaatcgccgagctgtcacgtttccgctcc
gccaaggaaatcggccaggcgctggccgggctggcagaaggcaggatcgacatcgtcatc
ggcactcacaagctgctgcagaaggatatggtgttcaagaacctcggcctggtcatcatc
gacgaggaacaccgtttcggcgtccgtcaaaaagagcagatgaaggtactgcgcgccgaa
gtggacgtgctgacattgaccgcaactcccatcccgcgcacgctggcaatgtcactggaa
ggcatccgcgatttttcggtgatcgccaccgccccgcagaagcgcctggcgatcaagacc
ttcgtgtcgcgctactcggatggcgtgatccgcgaagcggtgctgcgcgagctgaaacgc
ggcggccaggtgtatttcctgcacaacgaggtggaaaccatcctcaacatggaagccaag
ctcgccaaactgctgcccgaagcgcgcatccgcgttgcccacggccagatgccggagcgc
gaactggagcacgtgatgcgcgacttccatcagcaacacgtcaatgtgctgctgtgtacc
accatcatcgaaaccgggattgatattcccaccgccaacaccatcatcatgaaccgcgcc
gacaagttcggcctggcgcagctgcaccagttgcgcggccgcgtcgggcgctcgcaccac
caggcctatgcctatctgctcacgccggaggaagaggcactcacccctgctgccaaaaag
cgcctggaagccttgcagacgatggaagacctgggtgcgggcttttatctcgccatgcac
gatctggagatacgcggcgccggcgaggtgctgggcgattcacaaagcggcagcatgcag
gagatcggtttcagcctgtacaacgacatgctcaatcacgccgtggcagcgctgaaaaaa
ggcatcgaaccggacatgaaccagccgctcggggtgaccactgaaatcaatctgcacaca
cctgccctgctgcctgacagctactgcggcgacatccacgagcggctggtgctgtacaaa
cgctttgccaactgcagcagcagcgacgagctggacgacctgcacgccgagctggtggac
cgcttcggcctgctgccggaaccggcgcaggcactgcaggaatcgcaccgcctgcgcctg
ctggccaaaccgctggggattgccaagctggatgcctccagcgaggcgatcagcatccag
ttcgtgcccaacccgccgatcaacccggcgcggattattgagctgatccagacccggcgc
aatttcaagctggccggccagaacaggctacgcgtgacggtcgccgcgccgactttggca
aaccgcgtggacaatattagaaaattgtttaaagatctatcttaa
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