Sphingomonas sp. LM7: BXU08_02810
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Entry
BXU08_02810 CDS
T04824
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
splm
Sphingomonas sp. LM7
Pathway
splm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
splm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BXU08_02810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
splm03400
]
BXU08_02810
Enzymes [BR:
splm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BXU08_02810
DNA repair and recombination proteins [BR:
splm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BXU08_02810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
AAA_16
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AQR72741
UniProt:
A0A1S6FGI6
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All DBs
Position
complement(585044..588502)
Genome browser
AA seq
1152 aa
AA seq
DB search
MPDLKKILSATRPLTLAGAPTGFLPWMLADLARAGGMAVFVAPDEAAMRAIASTAPYFAP
ELDILSYPAWDCLPYDRASPTLRAMSERLATLHALQTKSEKPRLLITTVNAATQRTLTPF
RIRQLVARLAPGERIGLDKLATLLQANGYVRVDTVNDAGEFAVRGGLVDLFPSGAEQALR
LDFFGDEIESVRTFDPQDQRTTGRVDGFVLLPASEALLDEESIKRFRSRYREKFGANATS
DPLYQAISDGRRLAGMEHWLPLFEEKLQTLFDHLPDAAVIVRDTATAGAGEQRFEAIADY
QQNRVRAESSAPGSYRPLATDTLYLTPDEWAQAIDHGPVHTATPFHEPESATVLDFDVDG
PRDFAPERAAGTNVYEAVVTHLGKVRKDGRKPILASYSNGARERLSGLLGDHGLKGARNA
ETWQEALGAADKGIALIVLPLDHGFTAPDVAVLTEQDMLGDRLIRRSKRRKNTDAFLQEL
ATLSPGDLVVHIEHGIGRYDGLTQIPVQKAPHDCVALSYAGGDKLYVPVENLEVLSRYGA
GEEGATLDRLGGEAWQRRKSKMKERIQEIAGELIATAAKRATRPAEVAEPDHGGYPAFVD
RFPYEETDDQDRAINDVLGDLAAGRPMDRLIVGDVGFGKTEVALRAAFVAAMAGMQVAVV
CPTTLLARQHHRNFVERFQGFPIEVGRLSRLVPAAEAKAVKEGLAEGKIDVVIGTHAILS
KSIDFKRLGLVIVDEEQRFGVTHKERLKAMKADVHVLTLTATPIPRTLQMAMSGLRELSV
IQTPPVDRLAVRTYVMPWDPVVLREALLREHYRGGQAYFVTPRISDLPDIEKFLREDVPE
ITYVVAHGQMAPTEVEERMSAFYDRRYDLLVSTTIIESGLDIPSANTLIVNRADKFGLAQ
LYQIRGRVGRAKTRAYAYMTTPPERQMTEAAAKRLKVLSDLESLGAGFQLASHDLDIRGA
GNLLGDEQSGHIKEVGYELYQSMLEEAIMDAKAGGPRDDIRPKDLSPSITVDAPIMIPED
YVPDLDLRMGLYRRLNDVEDTRGIEEFAAELIDRFGKLPEPTDNLLRLIEAKLNAKKACI
SKIDVGPKGALVTFHEDKFPNVPGLLAYVDKLGETARLRPDMKLVINRAWANPQARLHGA
LQLSRGLAKAAG
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgcctgacctcaaaaagattctctccgccacccgcccactgaccctcgcgggtgccccg
acaggctttctgccgtggatgctcgccgatctcgcccgcgccggcggaatggcggtgttc
gtcgcccccgacgaggcggcgatgcgcgcaattgcatccaccgcgccctatttcgcgccc
gagctcgacatcctcagctacccggcctgggattgccttccctatgaccgcgccagcccg
acgcttcgcgcgatgtccgagcgcctcgccacgcttcacgctcttcagacaaaatctgaa
aagccgcggctattgatcactacggtcaacgccgccacccagcgtacgcttacgcctttc
cgcatccgccagctcgtcgcgcggctcgcgccgggcgagcggatcggcctcgacaagctc
gcgaccctgcttcaggcgaacggctatgtccgcgtcgataccgtgaatgacgcaggcgag
ttcgcagtacgcggcggcctcgtcgatctcttcccgagcggtgccgaacaggccctccgc
ctcgactttttcggcgacgaaatcgaatcggtccgcaccttcgatccgcaggaccagcgc
accaccggccgcgtcgacggcttcgtcctccttcccgcctccgaagcgctgctcgacgaa
gaatcgatcaagcgcttccgcagccgctatcgcgagaagttcggcgccaatgcgaccagc
gatccgctctatcaggcgatcagcgacggccgccgcctcgctggcatggagcattggctg
ccgctgttcgaagagaagctccagaccctgttcgatcacttgcccgacgcggcggtgatc
gtccgcgataccgccaccgcaggcgccggcgagcagcgcttcgaggcgatcgccgattac
cagcagaaccgcgtccgcgccgaaagctcggcgccgggcagctatcgcccgctcgccacc
gacacgctgtacctgacgcccgacgaatgggcccaggcaatcgatcacggcccggttcac
accgccacgccgtttcacgagcccgaatcggccaccgtgctcgacttcgacgtcgatggt
ccgcgcgacttcgcccccgagcgggccgcgggcacgaatgtctacgaagccgtcgtcaca
catctcggcaaggtacggaaagacggcaggaaaccaatcctcgccagctattcgaacggc
gcccgcgagcgcctttcgggcctgctcggcgatcacggcctcaagggcgcccgcaatgcc
gagacctggcaggaagcgctcggcgcggccgacaagggcatcgcgctcatcgtgctgccg
ctcgaccatggcttcactgcacccgatgtcgcggtgctcaccgagcaggacatgctcggc
gaccgccttatccggcgctccaagcggcgcaagaacaccgacgccttcctccaggaactc
gccacgctctcgccgggcgacctcgtcgtccatatcgagcacggcatcggccgctatgac
gggctgactcagatcccggtgcaaaaggcgccgcacgattgcgtcgccctctcctatgcc
ggcggggacaagctctacgtccccgtcgaaaatctcgaagtcctcagccgctacggcgcc
ggcgaggaaggcgccacgctcgatcggctcggcggcgaggcatggcaacgccgcaagtcg
aagatgaaggagcggatccaggagatcgcaggcgagctcatcgccaccgcggccaagcgc
gccacacgccccgccgaagtcgccgagcccgatcatggcggctatcccgccttcgtcgat
cgcttcccgtacgaagagaccgacgatcaggaccgcgcaatcaacgacgtgctcggcgat
ctcgccgcgggccgcccgatggaccgcctgatcgtcggcgatgtcggcttcggcaagacc
gaagtcgcactgcgcgccgccttcgtcgcggcaatggcggggatgcaggtcgccgtggtc
tgcccgaccacccttctcgcccgccagcaccaccgcaacttcgtcgagcgcttccagggt
ttcccgatcgaagtcggccgcctgtcgcgcctggtccccgccgccgaagccaaggcagtc
aaggaagggctggccgagggcaagatcgacgtggtgatcggcacccatgcgatcctgtcc
aagtcgatagacttcaagcgactcggcctcgtcatcgtcgacgaggaacagcgcttcggc
gtcacccataaggaacgtctcaaggcgatgaaggcggacgtccacgtcctcaccctcact
gccaccccgatcccgcgcacgctccagatggcgatgagcggcttgcgcgagctttcggtg
atccagaccccgccggtcgatcgcctcgcggtgcgcacctatgtcatgccgtgggacccg
gtcgtcctgcgcgaggcgctgctgcgcgaacattatcgcggcggccaggcctatttcgtc
acaccgcgcatctcggacctgcccgatatcgagaagttcctgcgtgaggacgtgccggag
atcacctatgtcgtcgcccatggccagatggcgccgaccgaagtcgaggagcggatgtcc
gcattctacgatcgccgctacgacctgctcgtctcgactacgatcatcgagagcggcctc
gacatccccagcgccaatacgctgatcgtcaaccgcgccgacaagttcggcctcgcccag
ctttaccagattcgcggacgcgtcggccgcgccaagacccgcgcctatgcctatatgacc
accccgcccgagcggcagatgaccgaagctgcagccaagcgcctcaaggtgctctccgat
ctcgaatcgctcggcgcgggcttccagctcgccagccacgatctcgacatccgcggcgcc
ggcaaccttcttggcgacgaacagtccgggcacatcaaggaagtcggctacgaactctac
cagtcgatgctggaagaggcgatcatggacgccaaggcaggcggcccgcgcgacgacatc
cgccccaaggacctgtcgccgtcgatcaccgtcgacgcgccgatcatgatccccgaagac
tatgtccccgatctcgacttgcgcatgggactctatcgccgcctcaacgatgtcgaggat
acccgcgggatcgaggaattcgctgcggagctgatcgatcgcttcggcaagctccccgag
ccgaccgacaatctgctccgtctgatcgaagccaagctcaacgccaaaaaggcctgcatc
tccaagatcgatgtcggccccaagggcgcgctcgtcacgttccacgaagacaagttcccc
aatgtcccgggcctgctcgcctatgtcgacaagctgggcgagaccgcccggctgcgcccc
gacatgaagctggtcatcaaccgcgcctgggccaacccgcaggcgcggctgcacggcgcg
ctgcaattgtcgcgcgggctggccaaggcggcgggataa
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