Sphingomonas sp. LM7: BXU08_12640
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Entry
BXU08_12640 CDS
T04824
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
splm
Sphingomonas sp. LM7
Pathway
splm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
splm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BXU08_12640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
splm03400
]
BXU08_12640
Enzymes [BR:
splm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BXU08_12640
DNA repair and recombination proteins [BR:
splm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BXU08_12640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
DUF2742
Motif
Other DBs
NCBI-ProteinID:
AQR74386
UniProt:
A0A1S6FL38
LinkDB
All DBs
Position
complement(2742191..2744650)
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AA seq
819 aa
AA seq
DB search
MAKPDPLEKYNAKRDFAQTAEPAGEIARTGGNRFMVQKHDATRLHWDFRIEVDGVLKSWA
VTRGPSIDPGEKRLAVRTEDHPLSYADFEGTIPKGQYGGGTVMLWDDGVWEPIEGKSAKD
LEKGHLHFRLQGERMNGEWLLIRLKPRGKERGENWLLRKIDDAYAGATDYLVETGLTSIK
TGRTMQEIAEGKKAGKRPAKASPQATARVAKHAAPPRNAKLPEFEKPQLATLVDSVPTGS
QWLHEVKYDGYRALIATGAKGPKIYTRTGLDWTDKFPGIAAAAKSLPAPALIDGEIVAFK
AGKPDFSTLQEAISAGGEGLSFFAFDLLRDRGEDTAKLPQLTRKERLRALLEGADERIQF
SEHIAGAGETLFEEMCREGFEGIVSKRADAPYRGARTKAWLKVKCIRRQEFVIIGWLPST
AKGRGLRSLLLAVNGADGLVYAGKVGTGFNQATLHDLRERFDKVAAKEAPVKVPRAEARG
AQWLKPSLVAEVAFSEFTAENVVRHGSFLGLREDKKAKDVVVETPAPLPDVPETSIKISS
RDRVIYPEAGLTKGQLADYYAAIAPVALRWLANRPISLVRCPQGRAKHCFFQKHDAGSFG
EQVHHVDVREKDGSVEPYLYIDDLDGIMACVQMGTIEFHGWGSLVADIEKPDRLVFDLDP
DEGLDFAMVKKAAEDLKEHLADIGLTSWPLLSGGKGVHVVVPLIPQAEWPAVRSFAERFA
RALAQAEPDRFTANLKKVTRKGKIFIDYLRNQRGATAVLPYVARARENAPVAAPVTWSEL
RDLDSAKLYTIRDATALLERATSRALQGWGEAEQALPDL
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
gtggccaagcccgacccgctcgaaaaatacaatgccaagcgcgacttcgcgcagactgcc
gagcccgcgggcgagatcgcacgcaccggcggcaaccgcttcatggtccagaagcacgac
gccacccggctccactgggacttccgcatcgaagtggacggcgtgctcaagagctgggca
gtcacccgcggcccgagcatcgacccgggcgagaagcgcctcgcggtgcgcacggaggat
catccgctgtcctatgccgatttcgagggcacgatccccaagggccaatatggcggcggc
acggtgatgctgtgggacgatggcgtctgggagccgatcgaaggcaagagcgccaaggat
ctggagaagggccatctccacttccgcctccaaggcgagcggatgaacggcgagtggttg
ctcatccgcctgaagccgcggggcaaggagcggggcgagaattggctgctccggaagatc
gacgatgcctatgccggcgccaccgactatctggtcgagaccgggctcaccagcatcaag
accggccgcacgatgcaggagatcgccgagggcaagaaagcgggcaagcgccccgccaag
gcttcgccgcaagccacggcgcgagtggcaaagcatgccgcgccgcccaggaacgccaag
ctgccggaattcgagaagccgcagctcgctacgctggtcgatagcgtcccgaccggcagc
cagtggctccacgaagtcaaatatgacggctatcgcgcgctgatcgccaccggcgccaag
gggcccaagatctacacccgcaccgggctcgactggaccgacaaattccccggcatcgcc
gcggcggcgaagagcctccccgcccccgcgctgatcgacggcgagatcgtcgcgttcaag
gcgggcaaacccgatttctcgactctgcaggaagccatttccgcgggcggcgagggactg
agtttcttcgcgttcgacttgctgcgcgaccggggcgaagacaccgccaagctcccccag
cttactcgcaaggagcggctccgcgcgctactcgaaggcgccgacgaacgcatccagttc
tccgagcatatcgccggtgccggcgagacgctgttcgaggagatgtgccgcgaggggttc
gaggggatcgtctcgaagcgcgccgatgcgccgtatcgtggcgcgcgcaccaaggcctgg
ctcaaggtcaaatgcataagacgccaggaattcgtgatcatcggctggctccccagcacc
gccaagggccgcggccttcgctcgctgctgctggcggtcaacggtgccgacgggctggtt
tatgccggcaaggtgggaacgggattcaaccaggcgacgctccacgatctgcgcgagcgc
ttcgacaaggtcgcggcgaaggaagcgccggtgaaggtgccccgcgccgaggcgcgcggc
gcgcagtggctcaagccgagcctcgtcgccgaggtcgcgttcagcgagttcaccgccgag
aatgtcgtgcgtcatggcagcttcctcggcttgcgcgaggacaagaaggccaaggacgtc
gtcgtcgaaacgcccgcgccgctccccgacgttcccgaaaccagcatcaagatcagcagc
cgcgatcgagtgatctatcccgaggcggggctgaccaaggggcaactcgccgattattac
gccgcgatcgcgccggtggcgctgcgctggctggccaatcgcccgatcagcctggtccgc
tgcccgcaaggccgcgcgaaacactgtttcttccagaagcacgatgccggcagcttcggc
gagcaggtccaccatgtcgatgtccgcgagaaggacggcagcgtcgagccctatctctat
atcgacgatctcgatgggatcatggcgtgcgtccagatgggtacgatcgagttccacggt
tggggcagcctcgtcgccgatatcgagaaacccgatcgtctggtcttcgatctcgaccct
gacgaggggctcgatttcgcgatggtcaagaaggcggcggaggacctcaaggagcatctc
gccgatatcgggctgaccagctggccgctgctatcgggcggcaagggcgtgcacgtcgtc
gtgccgctgatcccgcaggcggagtggccggcggtgcgcagctttgccgaacgcttcgcc
cgcgcgctggcgcaggccgagcccgaccgcttcaccgccaacctcaaaaaggtgacgcgc
aagggcaagatcttcatcgactatctgcgcaaccagcgtggcgcgactgcggtactgccc
tatgtcgcgagggcccgcgaaaacgcgccggtcgccgcgccggtcacctggagcgagctg
cgcgacctcgactcggccaagctctacacgatccgcgacgccacggcgctgctcgagcgc
gccaccagccgcgcgctgcagggctggggcgaggccgagcaggcgctaccggatttgtga
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