KEGG   PATHWAY: splu00020
Entry
splu00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces pluripotens
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
splu00020  Citrate cycle (TCA cycle)
splu00020

Module
splu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:splu00020]
splu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:splu00020]
splu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:splu00020]
splu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:splu00020]
splu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:splu00020]
Other DBs
GO: 0006099
Organism
Streptomyces pluripotens [GN:splu]
Gene
LK06_018620  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
LK06_010585  type II citrate synthase [KO:K01647] [EC:2.3.3.1]
LK06_025275  citrate synthase [KO:K01647] [EC:2.3.3.1]
LK06_025280  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
LK06_026395  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
LK06_002080  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
LK06_022575  2-oxoglutarate dehydrogenase E1 component [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
LK06_007780  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LK06_012670  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
LK06_012675  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
LK06_020265  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
LK06_020260  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
LK06_021725  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LK06_001595  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LK06_020470  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LK06_021720  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LK06_001590  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
LK06_020465  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LK06_001600  succinate dehydrogenase [KO:K00241]
LK06_020480  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
LK06_020475  succinate dehydrogenase [KO:K00242]
LK06_021400  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
LK06_021365  aspA; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LK06_020325  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LK06_000670  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
LK06_021095  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
LK06_007795  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
LK06_008780  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
LK06_000420  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
LK06_000425  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
LK06_000430  dehydrogenase [KO:K00627] [EC:2.3.1.12]
LK06_007785  2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
splu00010  Glycolysis / Gluconeogenesis
splu00053  Ascorbate and aldarate metabolism
splu00061  Fatty acid biosynthesis
splu00071  Fatty acid degradation
splu00190  Oxidative phosphorylation
splu00220  Arginine biosynthesis
splu00250  Alanine, aspartate and glutamate metabolism
splu00280  Valine, leucine and isoleucine degradation
splu00350  Tyrosine metabolism
splu00470  D-Amino acid metabolism
splu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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