Schizosaccharomyces pombe (fission yeast): SPCC1919.05
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Entry
SPCC1919.05 CDS
T00076
Name
(RefSeq) putative Ski complex TPR repeat subunit Ski3
KO
K12600
superkiller protein 3
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPCC1919.05
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spo03019
]
SPCC1919.05
Messenger RNA biogenesis [BR:
spo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
SPCC1919.05
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_19
TPR_2
TPR_1
TPR_17
TPR_12
TPR_16
TPR_8
TPR_11
TPR_14
TPR_22
TPR_9
ANAPC3
TPR_10
RPN7
TPR_7
T7SS_EccA1_N
BTAD
Motif
Other DBs
NCBI-GeneID:
2539136
NCBI-ProteinID:
NP_588487
PomBase:
SPCC1919.05
Ensembl:
SPCC1919.05
UniProt:
O94474
LinkDB
All DBs
Position
III:2212710..2218608
Genome browser
AA seq
1389 aa
AA seq
DB search
MAKPALKAAKEALVVKNYELAIEQSKKALSFDANNYNANVFLGVAYFSTKQLSESKEAYL
DAIKIDEKAVLAWQGLWNLYESTHDISELHKITPILASKFLELEEQNKCLNTVNKYMEVV
KKYGNKADEFKALKLLTPEEGEIYEYLEGRVLPLQTVYMQMVDIQESMDRCYFESEVNKR
KTRLGARLEQVMRDVELEIYKDSPLETLYNQIINYAETDEIRRLTESKLLHMYNKLLILS
EIKEKSHWRERIWDLIQGMVTLHIPEQAAWTIYFEWQDHSDISFFQSAELQEYIELFPGS
PLAQALFAFRNSDLWHKEHPIQLEDSNNSAELAKETKEEDDSENSVDKKENEEDIISSTM
MPQDEVLANLTEAYENAPQSTIISECLAKYYIHLKEYEYAIGLSKAALEVLKRLQQDTGV
KLDKLTRIFQLCLAIGYSHYEVPRYLFQAMHYYDILLAADPRNYHALLGKGLVQIENEQY
SDAVKTLGLLLDDHENDPSLSELSWCYFKTGNLPKAISTVEKCLDVLLSMDVERFKIAEA
YYRYGIYILNRKSENYLEDSFSAFVSSLRKDPNYAPAYTSLGLYYRDIHDMVRATKCFQK
AFELDASQVEAAEALAKTFAEANEWELVEVISRRVLNTSENDLKRKKKFNWHHTSLGVLE
LNAKNFHKAIVHFQSALRISPKDTNAWSGLGEAYARSGRYVSALKAFNRASILDPDDWYV
KYFIATLEKDMGEYEVAVSTLSEILAVRSKELCVQVSLAETYVRLAKLYHARGFYSRAAD
SLEKSIQICCNVLKEDITSIFSWEILGDACLSFCQLKNYHNRFPNSLISDILFTTEAMKC
ANNGRQFENMIYLPDLETSSGAIFIAAVAITCFTIHLSLVADDKLLLPVSWYNLGSSYYR
FYECDTTKDATLQVAINCIKQAIKLEAKNYVFWNMLGVLFSQTKAVRSAQHCYIQSLLLN
ERSSGVWANYGALCIQNHDVECANAAFTRSISIDPDNSQAWLGKAYCSIAVGSIRKAVQI
IHHAFEISSGKMPDVNYWYADTMLHAVNTEDFVTTDGDIWSATYAIKRYLGENPTDTFAY
YIKASLLEHLGETTDSVPSAIRLCELLEQEYDVSESPVILKRFIDAKALLGRLYLAKKSF
ENSVEQAGIALDLLEGEEDEDIKRTTLGLNLTCGTASFFLNKLEKSLDCFEKALLVSDSN
ADVVVLVSKVLWALGSENGKQAAREQLFEALEQSPSHIGSLLCLGAIAIYDEDDAVCSAI
EDSIAHLKKDEVLRSGALKQVQIMEVLLTKKIDESMIKSLLQRFLHVYPFAASSWTLLTN
RYASKSLANAFATTLYTHPSRPDDLAQSYRLQNSIDRAQVAIHLVPWDSANWKALHGVTH
EALVSSDAS
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaccagccctcaaagcagctaaagaagctctagttgtaaaaaattatgaatta
gcgatagaacaatcaaagaaggctctctcgtttgacgccaacaactataatgccaatgta
tttttgggggttgcatatttctcaacaaaacagctttctgaatcaaaagaggcttatttg
gatgcaataaaaattgacgagaaagcagttttggcttggcaagggttatggaatctctat
gaaagcacacatgacatttcggagttacataaaatcacacccatcttggcttctaagttt
ttggaactggaagagcaaaacaaatgtctcaacaccgtcaacaaatacatggaagtagta
aaaaagtatggaaataaggccgatgagtttaaagctttaaaactgcttactccggaagaa
ggtgaaatttatgaatatctagagggaagagttcttcctcttcaaactgtttacatgcaa
atggttgatattcaagaaagcatggatcgttgctacttcgaatcagaagtcaataagcgt
aaaacacgtctgggtgcgcgtcttgaacaagttatgcgagatgtggagctggaaatttat
aaagattcccctttagagacactttataatcagattattaactatgcggaaacggatgaa
atacgtcggcttactgaatcaaagctcttgcacatgtataacaagcttttaatactttca
gaaataaaagaaaaaagtcattggcgcgaacgaatttgggatttgattcaaggaatggtt
actttgcacatacctgagcaagcagcatggacgatatattttgaatggcaggatcactct
gacatctcattttttcaatctgcagaactccaggagtatatagagttgtttccaggatct
cccttagcccaggctcttttcgcatttcgtaattccgacttgtggcacaaagagcatccc
attcagctagaagacagcaacaatagcgctgaactagcaaaagaaacaaaagaggaagac
gattcagagaattcggtcgacaaaaaagaaaatgaggaagacattatttcttctaccatg
atgcctcaagatgaagtccttgcaaatttaactgaggcctacgagaatgctccacaatct
acaataatttcagagtgtcttgcaaagtactatattcatttaaaggaatatgaatatgca
attgggctttccaaggcggctcttgaagttttaaaaaggcttcagcaagatactggtgtt
aaactagataaactgacacgtatcttccagctttgtttggctattggttactcacactat
gaagttccacgttatttatttcaagctatgcattattacgatatacttttagcagctgat
ccacggaattaccatgctctgcttggaaaagggcttgtccaaattgaaaatgaacagtat
tctgatgccgttaaaacccttggtctactcttagacgaccacgaaaatgatccatctctt
tctgaattgtcatggtgctattttaaaactggcaatctgcctaaagcaatatcaactgtt
gaaaagtgcttagatgttcttctcagtatggacgttgagcgtttcaaaattgccgaagct
tattaccgttacggaatatatatactcaatcgaaaatcggaaaactatctcgaagattcc
ttttcagcttttgtttcttcacttcgcaaagacccaaattatgctcctgcatatactagt
ttaggcttgtattatcgcgatattcatgatatggttcgtgcaacgaaatgcttccaaaaa
gcttttgagctagatgcctcacaggtcgaggcagctgaagcccttgctaaaacatttgca
gaagcaaatgaatgggaactcgttgaggttatttcgagaagagtattaaacacttcagaa
aatgatctcaagcgtaaaaaaaagttcaattggcatcacacttcccttggtgttctcgaa
ctgaatgctaaaaatttccataaggccattgttcactttcaatcagctttgagaatttcc
cccaaagatacaaatgcttggagcgggttaggcgaggcatacgctcggtctggtagatat
gtctctgctctaaaagcgtttaaccgtgcatcaattttagaccctgacgattggtatgtc
aaatatttcatagctactttggaaaaagacatgggtgaatatgaagtggctgtttctaca
ctttccgaaattttagctgtacgatccaaagaactctgtgttcaagtttcacttgctgaa
acttacgtaaggctagccaaactttaccatgctcgtggattttatagtcgcgcagccgat
agtttagagaagtcgattcaaatttgttgcaatgttttgaaagaggatattacatccatt
ttttcttgggaaatattgggggacgcatgtttatcattctgccaattaaaaaattaccac
aaccgttttccgaattctttgatttctgatattttatttacaacagaggctatgaaatgt
gctaacaatggcaggcagtttgaaaatatgatatatttacctgacctggaaacatcttct
ggagcaatatttattgctgcagtcgccataacttgctttacaattcatttgtctttggtt
gcagatgataaattgcttttacctgtttcttggtacaatcttggatcttcttactatcgg
ttttacgaatgtgatacaactaaagatgcgacattgcaggttgccattaactgtattaag
caagctattaaattggaagctaaaaactatgttttttggaatatgctaggggttttattt
tcccaaaccaaagctgtacgctcagctcaacattgttatattcagtctcttcttctaaat
gaaagaagttccggagtgtgggcaaattatggtgctctttgtatacaaaatcacgatgtg
gaatgcgcaaacgctgcgtttactcgttctatctctattgacccagataactcacaggct
tggttgggtaaagcttattgttcaattgcggttggatctattcggaaggcagttcaaata
atccatcatgcatttgagatatcctctggtaagatgccagatgttaattattggtacgcc
gacacgatgctacatgcagtaaacaccgaggacttcgtgacaacagacggcgatatttgg
tctgcaacctatgctattaaaaggtatcttggggaaaatccaaccgatacatttgcatat
tatatcaaggcttccttactagaacaccttggggagacgacggatagtgttccctcggcg
atacggttgtgtgaacttttagaacaggagtacgatgtttccgaatctcctgtcatattg
aagagatttattgatgcaaaagccttactcggcaggttatatttggctaagaaaagtttt
gagaattcagttgaacaagccggtattgcactggatttattagaaggggaagaagacgaa
gatattaaacggactacccttggactgaatctcacatgtggaaccgcctctttctttttg
aataagttagagaaatcactggattgttttgaaaaggctttgcttgtgagcgattcaaat
gccgacgtcgtagttttagtatccaaggtgttatgggcccttggcagtgagaatggcaaa
caagccgcaagggaacaattatttgaagctcttgaacagtcccctagccatattggttcg
ttgttatgtcttggtgcaatagctatttatgatgaagatgatgctgtatgctctgcgatt
gaagattccattgctcatttgaagaaagacgaagtacttcgtagcggggccctcaaacaa
gttcagattatggaggttttattaacgaagaaaatagatgaatcaatgattaaatcgctt
ttacaacgatttcttcatgtttatccgtttgcagcttctagttggactttacttaccaac
cgttatgcttcaaagtctttagcaaacgcatttgctactacgttgtatacacacccttca
cgaccagacgatttggctcagtcctatcgtttgcaaaatagcattgatcgtgcacaagtt
gccatccacttggttccatgggattccgcaaattggaaagctttgcatggtgttactcat
gaggcactagtttcaagtgatgcttcgtag
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