KEGG   PATHWAY: spoi00020
Entry
spoi00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Spongiibacter sp. IMCC21906
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
spoi00020  Citrate cycle (TCA cycle)
spoi00020

Module
spoi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:spoi00020]
spoi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:spoi00020]
spoi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:spoi00020]
spoi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:spoi00020]
spoi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:spoi00020]
Other DBs
GO: 0006099
Organism
Spongiibacter sp. IMCC21906 [GN:spoi]
Gene
IMCC21906_02221  citrate synthase [KO:K01647] [EC:2.3.3.1]
IMCC21906_01676  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
IMCC21906_02279  aconitase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
IMCC21906_01996  isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
IMCC21906_02216  2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
IMCC21906_02215  2-oxoglutarate dehydrogenase E2 component [KO:K00658] [EC:2.3.1.61]
IMCC21906_02214  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
IMCC21906_01459  2-oxoacid:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
IMCC21906_01460  2-oxoacid:ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
IMCC21906_02212  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
IMCC21906_02213  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
IMCC21906_02218  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
IMCC21906_02217  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
IMCC21906_02220  succinate dehydrogenase subunit C [KO:K00241]
IMCC21906_02219  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
IMCC21906_01279  fumarase, class I, homodimeric [KO:K01676] [EC:4.2.1.2]
IMCC21906_02353  fumarase, class II [KO:K01679] [EC:4.2.1.2]
IMCC21906_02339  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
IMCC21906_01785  biotin carboxylase [KO:K01959] [EC:6.4.1.1]
IMCC21906_01786  oxaloacetate decarboxylase alpha subunit [KO:K01960] [EC:6.4.1.1]
IMCC21906_00582  ATP-dependent phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
IMCC21906_02680  pyruvate dehydrogenase E1 component, homodimeric type [KO:K00163] [EC:1.2.4.1]
IMCC21906_02679  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
spoi00010  Glycolysis / Gluconeogenesis
spoi00053  Ascorbate and aldarate metabolism
spoi00061  Fatty acid biosynthesis
spoi00071  Fatty acid degradation
spoi00190  Oxidative phosphorylation
spoi00220  Arginine biosynthesis
spoi00250  Alanine, aspartate and glutamate metabolism
spoi00280  Valine, leucine and isoleucine degradation
spoi00350  Tyrosine metabolism
spoi00470  D-Amino acid metabolism
spoi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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