Spongiibacter sp. IMCC21906: IMCC21906_00910
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Entry
IMCC21906_00910 CDS
T03945
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit, predominant form
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
spoi
Spongiibacter sp. IMCC21906
Pathway
spoi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spoi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IMCC21906_00910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spoi03021
]
IMCC21906_00910
03400 DNA repair and recombination proteins [BR:
spoi03400
]
IMCC21906_00910
Enzymes [BR:
spoi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IMCC21906_00910
Transcription machinery [BR:
spoi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IMCC21906_00910
DNA repair and recombination proteins [BR:
spoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IMCC21906_00910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AKH68590
UniProt:
A0A0F7LZ47
LinkDB
All DBs
Position
962232..966449
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLNLLKQGQQNDEFDSIRIGLASPELIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERILYFESYVVTDPGMTTLEKGQLLSDEQYFESMEEFGDEFVAKM
GAEAIMHLLMELDLTEEINRLREEVPATNSETKIKKLSKRLKLIEALADSGNKPEWMIMK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIFGKLEARGLATTIKAAKKMVEREPPEVWDILAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLES
RALMMSTNNILSPANGEPIIVPSQDVVLGLYWMSRARVNARGETMRFSNPEEVHRAYVSG
EAHLQARIKCRLLEVNYDEEGVRHEKRHVVDTTIGRVLLWRIVPEGLPFDMVNQTMTKKA
ISRLLNECYRKVGLKATVILGDQLMYTGFEYSTRSGSSIGVNDFEIPEAKARIVDAAHAE
VVEIEKQYASGLVTQGEKYNKVIDIWSRANDMVSKSMMEGLSKETVINRDGEEEEQDSFN
SVYIYADSGARGSPAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEDDCGTDQGLLMTPVIEGGDIIETLGDRVL
GRIVAKDVLIPGSDDVAVAAGVMLDEKGIIELEEMGIDEIEVRSPITCDTRHGVCSMCYG
RDLARGHLVNRGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRATAVDSIQIKQDGKVRL
HNLKYVERIDGLLVAVSRSGELAVTDSSGRERERYKLPYGALIKVADRSEAKAGDIVATW
DPHTHPIVTEVAGIVKMSGMEEGITVKRQTDELTGLSSISVMEQSERPAAGKDMRPAVTL
VDKNGDELCLAGTNVPAHYFLTDHAIISLENGAEVKVGDIIARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTVSFGKETKGKRRLVITPADGKPLADGSDHYEVLIPKWR
QLTVFEGEQVEKGEIVSEGPLSPHDILRLKGVEELAKYIVNEIQDVYRLQGVKINDKHIE
VICRQMLRKVNILAAGDSSFIKGEQAEYVRVEEENEILAAGDKIIASFERELLGITKASL
ATESFISAASFQETTRVLTEAAVTGKRDHLRGLKENVVVGRLIPAGTGLAYHRNRKLKRE
AGAATSSVSAQDVEAALTEALSENN
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagatttattgaatctactgaaacagggacagcagaacgacgaatttgactctatt
cgtattggtctggcgtcaccggagctgattcgctcctggtccttcggcgaagttaaaaag
ccggaaactattaactatcgtaccttcaagcctgagcgtgacggcctgttctgtgccaaa
atatttggtccggtaaaagactatgagtgcctgtgtggcaaatataagcgcctgaagcac
cgcggcgtcatttgtgagaagtgtggtgttgaggttgcgctggcgaaagtgcgtcgggaa
cgtatgggccacattgagttggccagcccagtcgctcacatttggtttttgaagtcactg
cctagccgtatcggtttgttgcttgatatgaccctgcgggacattgagcgcattctgtat
tttgaatcttatgtcgtgactgatccgggcatgacgaccttggaaaaaggtcagctgctg
agtgatgagcagtactttgaatctatggaagaatttggtgacgagtttgttgccaagatg
ggtgctgaagcgattatgcacctgctgatggagctggatctgaccgaagagattaatcgt
cttcgtgaagaagtgcctgctaccaacagcgaaacgaaaatcaagaagttgtccaagcgt
ttgaagttgattgaggcgctggctgactctggtaacaaaccagagtggatgatcatgaag
gtactgccagtactgccgccggatctgcgtccgctggtgccgctggatggtggtcgtttt
gcgacgtctgacctgaacgacttgtatcgccgggtaattaaccggaataaccgtctcaag
cgtctgctggatcttaacgcaccagacatcattgtgcgcaacgaaaagcggatgcttcaa
gagtcggtagatgcattgttggataatggtcgccgcggtcgtgctattacgggttctaac
aaacgtccattgaaatcacttgctgatatgatcaaaggtaagcagggtcgtttccgtcag
aacttgttgggtaagcgggtagattactctggccgctcggtcattgtggttggccctact
ttgcgcctgcatcagtgtggtcttcctaagaagatggcgctggaactgtttaagcccttt
atctttggtaagttggaagcccggggtttggcgaccacgattaaagctgccaagaaaatg
gttgagcgtgagccgccagaagtatgggatattcttgccgaggttatccgcgagcacccc
gtactgctaaaccgcgcaccgacgcttcaccgtttgggtattcaagcctttgagcctgta
ttgatcgaaggtaaggcgattcaattgcacccgctggtttgtgcagcttacaacgccgac
tttgacggtgaccagatggcggtacacgtaccgttgacactggaagctcagcttgaatcc
cgtgcgttgatgatgtcgactaacaacattctgtcgcctgctaacggtgagcccatcatt
gttccgtctcaggacgtggtgttgggtttgtactggatgtcacgagctcgggtaaatgcc
cgtggcgaaaccatgcgtttctccaatcctgaagaagtgcatcgcgcctatgtttctggc
gaagcacacctgcaagcgcgtatcaaatgtcgcttgttagaggttaattacgacgaggaa
ggtgttcgtcacgagaaacgccacgtggttgataccaccattggtcgtgttctgttgtgg
cgcattgttcccgaaggtctgccctttgacatggttaaccagaccatgacaaagaaggcg
atctcaagactgctgaacgagtgttatcgtaaagttggtttgaaagcgacggttattctg
ggtgaccagttgatgtacaccgggtttgagtattccactcgctctggctcatccattggt
gttaatgactttgaaattccagaagccaaggctcggatcgttgatgcggcccatgctgaa
gttgtcgaaatcgagaagcagtatgcctccggtttggtaacacagggtgagaagtacaac
aaagttatcgatatctggtctcgtgccaacgacatggtttccaagtcgatgatggaaggc
ttgtcaaaagagacggtgattaaccgcgacggtgaagaggaagagcaggactctttcaac
tccgtgtatatctacgcggattcaggtgctcgtggtagcccggctcagattcgtcagttg
gcgggtatgcgtggtttgatggccaagcctgatggctccatcatcgaaacacccatcacg
gcaaacttccgggaaggtttgaacgtactgcagtacttcatctcgactcacggtgcgcgt
aaaggtttggcggatacggcactgaaaacagctaactcgggttacctgacccgtcgtttg
gttgatgtagcccaagacgtggtcattactgaagatgattgtggtacagatcaagggttg
ttgatgacgcctgttatcgagggtggcgacattattgaaaccctgggtgatcgcgtactg
ggtcgtatcgtggcgaaggatgtattaattcctggttctgacgacgttgctgttgccgcg
ggtgtgatgctggatgagaaaggcattatcgagctggaagagatgggtatcgatgaaatc
gaagtccgctcgcctatcacctgtgatacgcgtcatggcgtgtgctctatgtgttatggc
cgtgacctcgcccgaggccacttggtaaaccgcggcgaatccgttggtgttatcgcggct
cagtccattggtgagcccggtactcagctgaccatgcggaccttccatattggtggtgcg
gcatcgcgagcaacggcagtcgatagcattcagattaagcaagacggtaaggtgcgtttg
cacaatctgaagtatgttgagcgtattgatggcctgttggtggcggtaagtcgttctggt
gaactggcggttaccgatagcagtggccgtgagcgcgagcgctacaagctgccttatggt
gcgttgattaaggtggctgatcgttcagaggccaaagcgggtgacatcgttgcaacttgg
gatccccacactcaccccatcgtcacagaagtggcaggtatcgtgaagatgtctggcatg
gaagaggggattaccgttaagcgtcaaacagatgagctgacaggtctgagcagcatttct
gttatggagcagtctgagcgtcctgcggcggggaaagatatgcgtcccgctgtcacgttg
gtggataaaaacggtgacgagctttgcttggcgggtaccaatgtaccagctcactacttc
ttaaccgatcacgctattatcagtttggaaaatggtgctgaagttaaggtaggtgacatc
atcgctcgtatcccacaggagagctcaaagactcgggatatcactggtggtttgccacgg
gttgcagacttgtttgaagcgcgtaagcccaaagagccagcaattttggcagaaatctct
ggtaccgttagctttggtaaagagaccaagggtaaacgtcgtttggtgatcacccctgct
gatggcaagcctttggccgatggtagcgatcactacgaagtgttgattcctaagtggcgc
cagttgacggtgttcgaaggtgagcaggttgagaaaggcgagatcgtttcagaaggtccg
ttgagtcctcacgacattttgcgcttgaaaggcgttgaagagcttgccaagtacatcgtt
aacgaaattcaggacgtttaccgtctgcagggcgttaagatcaacgataagcacatcgaa
gtaatctgtcgtcaaatgctgcgcaaggtcaatattcttgcggcgggtgattcttccttt
atcaaaggcgagcaagctgaatatgttcgtgtggaagaagaaaacgaaatattggcggca
ggcgataaaattattgccagcttcgagcgcgaattgctaggtattaccaaggcgtcattg
gcgacagagtcgttcatctctgcggcttctttccaggaaacaacgcgagtgttgaccgag
gctgctgttaccggcaagcgcgatcatctccgtggcttgaaagaaaacgttgtcgtgggt
cgattgattccagcgggtaccggtttggcgtatcaccgtaatcgcaaactgaagcgtgag
gcgggcgcagcaacatcaagtgtgtcggctcaagatgtggaagcggcgttgacggaagcg
ttgagcgaaaataactga
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integrated database retrieval system
