Spongiibacter sp. IMCC21906: IMCC21906_02784
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Entry
IMCC21906_02784 CDS
T03945
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
spoi
Spongiibacter sp. IMCC21906
Pathway
spoi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spoi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IMCC21906_02784
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spoi03019
]
IMCC21906_02784
03009 Ribosome biogenesis [BR:
spoi03009
]
IMCC21906_02784
Enzymes [BR:
spoi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IMCC21906_02784
Messenger RNA biogenesis [BR:
spoi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IMCC21906_02784
Ribosome biogenesis [BR:
spoi03009
]
Prokaryotic type
rRNA helicases
IMCC21906_02784
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
Flavi_DEAD
AAA_22
adh_short
Motif
Other DBs
NCBI-ProteinID:
AKH70427
UniProt:
A0A0F7M8C9
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All DBs
Position
complement(2975628..2977394)
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AA seq
588 aa
AA seq
DB search
MSSPSQSADARDDLTFDDLNLRPEVLAAVKAVGYESPSPIQAATIPLLLEGKDVLGQAQT
GTGKTAAFALPLLSRLDLSRRKSVQALVLTPTRELAIQVAEAIQTYATNMPGFQILPIYG
GADYRGQLQALKRGVQVVVGTPGRVMDHMRRGTLSLAELNHLVLDEADEMLRMGFIDDVE
WILSAVPEQRQIALFSATMPPAIRRIANTYLTDPQQVTIKTKTTTAVTIRQRYWLARGTN
KLDALTRILEAEAFDGMIIFVRTKVQTTELAEKLQARGFAAAPLNGDVAQTQRERTVEQL
RSGKLDILVATDVVARGLDVERISHVINYDIPNDTEAYVHRVGRTGRAGRQGDAILFVAP
REKRMLYSIEKATRQSIQEMALPSADNINALRQDRFLQQIQESMQSPHLQAYRSLLTDYA
AQQDADPLDMAAALAILAQDDKPLFMAPEAPRTEKSAEKKRGMSADMNRYRIEVGREHGV
SAGNILGAIANETGLSGQEIGRIQLFKDFSTVEMPGNVSDNVLSALQDVWVAGQQLRASV
YQGSDVADRPQKPRTKKPGGNPKNKKAKARSKANDGRSFISKAKRPTK
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaccatcccaatccgcggacgctcgcgacgatcttacttttgacgacctgaac
ctacggcctgaggttctggcagcggtgaaggcggtgggctacgaaagcccgtcacccatc
caagccgctactatcccattgttgttagagggcaaagacgttttgggtcaggctcaaacc
ggtacgggcaaaaccgcggcctttgccttgccgttgttgtctcgtttggacttgtctcgt
cgtaaatctgtacaagcgctggtgttgactccaacccgtgaattggcgattcaggtggct
gaagccattcagacatacgccacgaatatgccaggctttcaaattttacctatttacggc
ggcgccgattatcgtggccagctgcaagcattaaaacgtggtgtccaagttgttgtgggt
acaccaggccgagttatggaccatatgcgccggggcacgctgtcgctagctgaactcaat
cacctcgttttggacgaggcagatgaaatgctgcgcatgggttttattgatgatgtggag
tggattctgtctgcagtgcctgagcagcgtcaaatcgccttgttttcggcaaccatgccg
ccggctattcgtcgtattgccaatacctatttgacggatccccaacaggtcaccattaaa
acgaaaacaaccacagcggtgacgattcgccagcggtactggttagctcggggcacgaat
aagctcgacgcgctgacccgtattcttgaggcggaagctttcgacggcatgatcattttt
gtgcgcaccaaagtgcaaaccacggagttggctgaaaaactacaagcccgcgggtttgca
gcggcgcccctcaatggtgatgttgcccagacccagcgcgagcgcacggttgagcagttg
cgatctggcaagctggatattctggtagccaccgatgtggttgctcgggggctggatgtt
gagcgtatcagccacgttattaactacgatattcccaatgacactgaagcctatgtgcac
cgggtaggccgaacgggtcgtgctggccgtcagggtgatgcgattctgtttgtcgcgccc
agagaaaagcgcatgctttacagcattgaaaaagcgacgcgtcaaagcattcaggaaatg
gccctgcccagcgccgataacatcaatgctctgcgtcaagatcgttttcttcagcagatt
caagaatccatgcagtcgccacatttgcaagcgtatcgatcattgctaaccgattacgcc
gcccagcaagacgccgatcctttggatatggccgcagccttggctattcttgctcaggat
gacaaaccgctgtttatggcccctgaggcgcctagaaccgagaaatcggcagagaaaaag
cgtggcatgtctgccgatatgaatcgctaccgtattgaagtaggccgtgagcacggtgta
agtgcgggtaatatccttggcgccatcgccaatgaaaccggcttgtcgggccaggaaatt
ggtcgtatccagttgtttaaggatttcagcactgtcgaaatgccaggcaatgtgtctgat
aacgtgttgtctgcgttgcaagacgtatgggtcgccggtcaacaattgcgggcgtcggta
tatcagggtagcgatgtggcagatcgtccccaaaagccgcggactaaaaaacctgggggc
aatcccaaaaacaaaaaagcgaaggcgagatctaaggccaacgatggtcgtagctttatc
agtaaggcgaagcgccctactaaatag
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