Flagellimonas maritima: HME9304_01882
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Entry
HME9304_01882 CDS
T05505
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spon
Flagellimonas maritima
Pathway
spon03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HME9304_01882
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spon03400
]
HME9304_01882
Enzymes [BR:
spon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HME9304_01882
DNA repair and recombination proteins [BR:
spon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HME9304_01882
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AWX44877
UniProt:
A0A2Z4LUA4
LinkDB
All DBs
Position
complement(2056061..2059648)
Genome browser
AA seq
1195 aa
AA seq
DB search
MTKSSVLQLFEQSSQVGKLQSAIAQFSATSATSNNRPQESDLNKRHHIHLKGLTGSALSF
LISGVFKNSELPFLVLLNDKEEAAYYLNDLEQLIGENEVLFYPGSYRRPYQIEETDNANV
LLRAEVLNRINSRKKPAVIVTYPDALFEKVVTRKELDKNTLKIKLGDTLSLDFLNEVLFE
YQFKRVDFVTEPGEFSVRGGIMDVFSFSHDEPYRIEFFGDEVESIRTFDVETQLSTEKVK
RITIIPNVENKFLQESRESFLKYISPETIIFSKRLDLVYARVDSFFEKAKESFKKLGEDI
KHLKPEELFLNSSVLKEQLKDFCLVEIGTSAVSVSGNVVSTSLNHQKKQESVTEPFDFAQ
DRRGRSDEIIFNTKPQPSFNKKFDLLIENLNENHEAGFTNFIFCASEQQAKRFHDIFDDV
ASTMPVLSGAERVSHQKKNKDVLDTERSRSVHYKTLVFPLYQGFIDHDLKLVCYTDHQIF
ERYHKFHLKNGYAKKQAITLKELNKLEIGDYVTHIDHGIGKFGGLQKIDVEGKKQEAIKL
MYGERDILYVSIHSLHKISKFNGKDGAPPKIYKLGSGAWKKIKDKTKSRVKKIAFDLIKI
YGKRRLEKGFQYAPDSYLQHELEASFIYEDTPDQEKSTQDVKKDMESERPMDRLICGDVG
FGKTEVAIRAAFKAVDNGKQVAVLVPTTILAFQHSRTFKERLKEMPVTVDYLNRFRTAKE
KREIHERLAQGKIDIIIGTHQLVNKSVQFKDLGLLIVDEEQKFGVSVKDKLKSIKENVDV
LTLTATPIPRTLQFSLMAARDLSVITTPPPNRYPIESRVIGFNEEVIRDAVSYEIQRGGQ
VFFIHNRIENIKEVAGMIQRLVPDAKIGIGHGQMEGKKLEGLMLAFMNGEFDVLVSTTIV
ESGLDVTNANTIFIHNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPFEVMTPDARKRIE
ALEQFTELGSGFNIAMKDLEIRGAGDLLGGEQSGFINEIGFETYQKILAEAIDELKENEF
KELYEEVEGEKPKVFVKETQLDTDFELLFPDDYINNITERLNLYTQLNTIENEEGLNKFE
AELVDRFGELPIEAVDLFNSVRIKWIANSIGLEKVILKKNKFIGYFLSDQQSPFYQTDTF
TRVLQYVQSHPLQCKLKEKQTRNGLRLLLVFEAITSVEKALKALEPLSIKREAVS
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
ttgaccaaatcgtccgtgctacaattatttgaacagtcttcccaagtaggaaaactgcaa
tccgctattgctcaattttcagcgacttcggctacatccaataaccggccacaggagtct
gatcttaacaaaagacaccatatccatctaaaaggccttactggttccgctttgtctttt
ttgatttcaggcgttttcaagaatagtgaattaccgttcttggtacttttgaacgacaaa
gaagaggctgcttattacctaaacgacctagaacagttgataggcgaaaacgaagtgctc
ttttatcctggcagttatcgtcggccctaccaaattgaggaaacggacaatgcaaatgta
ttgctgcgagcagaggtattgaaccgtatcaattccagaaaaaaacccgcggtcatcgta
acgtatcctgatgcactttttgaaaaggtggtcactcgcaaggagttggataaaaacact
ttgaaaattaagttgggcgacacgctttcacttgactttctgaacgaagtactttttgaa
tatcagtttaagcgagtggattttgtaacagagccaggtgagttttcggttcgtgggggt
atcatggatgttttttctttttcgcatgatgaaccgtaccgtatcgagttttttggcgat
gaagtcgagagtattcgaacttttgatgtagagacacagctatccacggaaaaggtgaag
cgtattacaattatccccaatgtggaaaataaatttttacaggaatcaagggaaagcttt
ttaaaatatatttcaccggaaaccatcatattttcaaagcgattggatttggtatatgcc
cgagtcgattcattttttgaaaaagctaaagaaagttttaaaaaactcggcgaagacata
aaacatttgaagccagaggaattgttccttaattcaagcgtattgaaagaacaattgaag
gatttttgtttggtggaaattgggacttcggctgtgtccgtatcgggcaatgtggtttcg
acttcgctcaaccaccaaaaaaagcaggaatcggtcactgagcctttcgacttcgctcaa
gaccggcgtggcagaagtgacgaaattatattcaatacaaaaccccaaccgtctttcaat
aagaaattcgacctgctcattgaaaatctaaatgagaatcatgaagcaggttttacaaac
ttcattttctgcgcatcagaacaacaggctaaacggttccatgatatttttgatgacgtg
gcttcgactatgcctgtcttgagtggagcagaaagggtcagccaccaaaaaaaaaataag
gatgttttggacactgagcgtagtcgaagtgttcattacaaaactttggtttttccactc
taccaaggatttattgaccacgatttaaaattggtctgctatacggaccaccaaattttt
gagcgctaccataaattccatcttaaaaacggctatgccaaaaaacaggccataaccctc
aaagagctgaacaaactggaaattggtgactatgttacccatattgaccacggaattggt
aagttcgggggattacaaaaaatagacgttgaaggaaaaaagcaagaagccatcaaacta
atgtatggtgagcgtgatattctctacgtgagcattcactcactccacaagatttcaaaa
ttcaatggaaaggatggtgcaccacccaaaatctataaacttggttctggagcttggaaa
aaaataaaggacaaaaccaaaagcagggtcaagaaaattgccttcgaccttattaaaatc
tatggaaagcgccgattggaaaaaggattccagtatgctcccgacagttacttacagcat
gaactggaagcatcttttatttatgaggatacgcccgaccaagaaaaatccacacaagat
gtaaaaaaagatatggaaagcgagcgcccaatggaccgcttaatttgtggcgatgttgga
tttggaaaaaccgaggttgccattcgtgccgcttttaaagctgtggacaatggaaaacag
gtggccgttttggtaccgaccaccattcttgcctttcaacattccagaacattcaaggag
cgtttaaaagaaatgcccgttacggtagattacctcaaccgatttagaactgcgaaagaa
aaacgtgagattcacgaacgcttggcccaaggcaaaatcgatatcatcatcggcacccat
caattggtgaacaaaagtgtacaattcaaggatttgggactgcttattgttgatgaagaa
cagaaatttggggtttcggtaaaggacaagttaaagtccattaaggaaaatgtagatgta
ttgaccttaacggcaacgcccattccccgtacgctacaatttagtttgatggccgctcgt
gacctttcggtaattacaacgccaccacctaatcgttaccctattgaaagtagggtcatt
ggttttaatgaagaagttatccgtgatgcggtttcgtacgaaatccaacgtggcggacag
gtctttttcatccataatcgaattgaaaatattaaagaagttgctgggatgatccagcga
ttggtacccgatgccaaaatcggaatcggtcatgggcagatggaagggaaaaaattggaa
ggcttaatgctcgccttcatgaacggagagtttgatgtgctggtttcgaccactattgtt
gaaagtggtttggatgtcaccaatgccaacaccatttttatccataacgccaataatttt
ggtcttagcgacctgcatcaaatgcgtggtcgggtgggaagaagcaataaaaaggcgttc
tgttattttattactccccctttcgaggtcatgactcccgatgcccgaaaacgtattgag
gccctagagcagtttaccgagcttggtagtggattcaatattgcaatgaaagatttggag
attcgtggggcaggcgatttattgggcggtgaacagagtggatttatcaatgaaatcggt
tttgaaacctatcagaaaatattggcagaagccattgatgaactcaaagaaaatgagttt
aaagagctgtatgaggaagtggaaggcgaaaaaccgaaggtctttgtgaaagaaacccaa
ttggacaccgattttgaactgctttttcccgatgactatatcaataacatcacggaacgt
ttaaatctatatacccaactgaacactattgaaaacgaagaaggcttgaacaagtttgaa
gcggagctggttgaccgatttggcgaattgcccattgaagctgttgatttgttcaactcg
gttcgtattaaatggattgcaaatagcataggattggaaaaagtaatcctgaagaagaac
aaattcatcggttattttttatccgaccaacaatctccattttatcaaacagatacgttt
accagggttttgcaatacgtgcaaagccatccactacaatgcaagctgaaagaaaagcaa
actcgaaacggattgcgattgctgttggtttttgaagcaattaccagtgtggaaaaggcc
ctgaaggcattagagcccttgtctataaaacgtgaagccgtatcttaa
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