Streptomyces pristinaespiralis: SPRI_4432
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Entry
SPRI_4432 CDS
T04073
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spri
Streptomyces pristinaespiralis
Pathway
spri03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SPRI_4432
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spri03400
]
SPRI_4432
Enzymes [BR:
spri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SPRI_4432
DNA repair and recombination proteins [BR:
spri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SPRI_4432
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ALC22738
UniProt:
A0A0M4DDX8
LinkDB
All DBs
Position
5143946..5147479
Genome browser
AA seq
1177 aa
AA seq
DB search
MSLHGLLDAVVRDPALAEAVKAAGDGRRTHVDLVGPPAARPFAVAALARDAGRTVLAVTA
TGREAEDLAAALRSLLPDEGVVEYPAWETLPHERLSPRSDTVGRRLAVLRRLAHPSADDP
STGPVRVVVAPVRSVLQPQVKGLGDLEPVSLRTGQQADLNDVVEGLAAAAYSRVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEIAEHGLWAPPCRELL
LTTEVRRRAAALAEAHPELGELLGKIAEGIAVEGMESLAPVLVDEMELLLDVLPQGSMAV
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLWGIADVRDRARELGMM
WWSVSPFASEASDQEDDTVKLGMHAPDTYRGDTARALADTKGWLADGWRTVFVTEAHGPA
SRTVEVLGSEGIAARLDADLTEITPSVVHVACGSIDYGFVDPGLKLAVLTETDLTGQKAA
GKDGRRMPTRRRKTIDPLTLEAGDYIVHEQHGVGRYLEMVQRTVQGATREYLLVEYAPAK
RGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYS
ARMAAPGHAFGPDTPWQRELEDAFAYVETPDQLSTIAEVKEDMEKTVPMDRLICGDVGYG
KTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVVTRALSRFQSDADAK
ATLEGLRDGSVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRADVDVLT
MSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAVRRELLREGQVF
YIHNRVESIDRAAARLREIVPEARIATAHGQMSESALEQVVVDFWEKKFDVLVSTTIVES
GIDIANANTLIVERGDNFGLSQLHQLRGRVGRSRERGYAYFLYPPEKPLTETAHERLATI
AQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRASLEGG
VEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANTEEDIKAVREELTDRYGKL
PEPVENLLLVAGLRMLARACGVGEIVLQGSNIRFAPVELRESQELRLKRLHPRTVIKPAV
HQILVPRPTSGKIGGKPVVGRELLAWTGEFLTTILGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgatgccgtcgtacgtgacccggcgctcgccgaagcggtc
aaggcggccggcgacggccgccgtacgcatgtggacctggtggggccgcccgcggcgcgg
cccttcgccgtggccgccctggcccgcgacgccggccgcaccgtgctggccgtcaccgcc
accggccgggaggccgaggacctggccgccgcgctgcggtcgctgctgccggacgagggc
gtcgtcgagtacccggcgtgggagacgctgccgcacgagcggctctcgccccgctccgac
accgtcggccgccgcctcgccgtgctgcgccgcctggcccacccgtcggccgacgacccg
tcgacagggcccgtgcgggtcgtggtcgcgcccgtacggtccgtgctccagccgcaggtc
aaggggttgggcgacctcgagcccgtttcgctgcgcacggggcagcaggccgatctgaac
gacgtcgtcgaagggctggccgcggccgcctactcgcgggtggaactggtcgagaagcgc
ggcgagttcgccgtgcgcggcggcatcctggacgtcttcccgccgacggaggagcacccc
cttcgggtggagttctggggcgacgacgtcgaggagatccgctacttcaaggtcgccgac
cagaggtccctggagatcgcggagcacgggctgtgggccccgccctgccgtgagctcctg
ctgaccaccgaggtgcggcggcgtgccgccgccctcgcggaggcccaccccgagctgggc
gagctgctgggcaagatcgccgagggtatcgcggtcgagggcatggaatccctcgcgccg
gtgctcgtcgacgagatggaactgctgctggacgtcctgccgcagggctcgatggccgtg
gtgtgcgacccggagcgggtgcggacacgggcggccgacctggtggcgacgtcccaggag
ttcctccaggcgtcctgggccgccaccgcgggcggtggcgaggccccgatcgacgtcggc
gcggcctccctgtggggcatcgcggacgtacgggaccgggcgcgcgagctcgggatgatg
tggtggtccgtgtccccgttcgcgtcggaggcatccgaccaggaggacgacaccgtcaag
ctcggcatgcacgccccggacacgtaccgcggtgacaccgcccgcgcgctcgccgacacc
aagggctggctggccgacggctggcgcaccgtgttcgtgacggaggcgcacggccccgcc
tcccgcacggtggaggtgctggggagcgagggcatcgcggcacggctggacgccgacctg
accgagatcacaccgtcggtcgtccacgtcgcctgcggttccatcgactacggcttcgtc
gacccggggctcaagctggccgtcctcaccgagaccgacctgaccggccagaaggcggcc
ggcaaggacggccggcggatgccgaccagacgccgcaagacgatcgacccgctgaccctc
gaggccggcgactacatcgtccacgagcagcacggcgtgggccgctacctggagatggtg
cagcgcacggtccagggcgcgacccgcgagtacctgctcgtcgagtacgcccccgccaag
cgcggccagcccggcgaccgcctctacattccgaccgaccagctggagcaggtcaccaag
tacgtgggtggcgaggcgccgacactccaccggctcggcggagcggactggacgaagacc
aaggcgcgcgcgaagaaggcggtcaaggagatcgccgcggacctgatcaagctgtactcg
gcccgcatggccgcccccggccacgccttcggcccggacacgccgtggcagcgggagctg
gaggacgccttcgcttacgtggagacgcccgaccagctctcgacgatcgccgaggtcaag
gaggacatggagaagacggtcccgatggaccggctgatctgcggcgacgtcggctacggc
aagacggagatcgcggtccgggcggccttcaaggcggtccaggacggcaagcaggtcgcc
gtcctcgtccccacgaccctcctcgtccagcagcacttcggcaccttctcagagcgctac
tcgcagttccccgtggtgacccgggcgttgtcgcgtttccagtcggacgccgacgcgaag
gcgacgctcgaaggactgcgggacggctcggtcgacatcgtgatcggcacgcaccgcctc
ttctcctccgagaccaagttcaaggacctgggcctcgtcatcgtcgacgaggagcagcgc
ttcggcgtcgagcacaaggagcagctgaagaagctgcgggccgacgtggacgtcctgacg
atgtccgccacgcccatcccccgcacgctggagatggcggtgaccggcatccgcgagatg
tcgacgatcaccaccccgccggaggagcggcacccggtgctcaccttcgtcggcccgtac
gaggagaagcagatcggtgccgccgtgcggcgtgaactgctgcgcgagggccaggtcttc
tacatccacaaccgcgtcgagtcgatcgaccgggccgcggcgcggctgcgcgagatcgtg
ccggaggcgcgcatcgccaccgcgcacggtcagatgtcggaatcggcgctggagcaggtc
gtcgtggacttctgggagaagaagttcgacgtgctggtctccacgacgatcgtcgagtcc
ggtatcgacatcgccaacgccaacaccctcatcgtggagcgtggcgacaacttcggcctc
tcgcagctccaccagctgcgcggccgtgtcggccggagccgggagcgggggtacgcctac
ttcctctacccgccggagaagccgctcacggagaccgcgcacgagcgtctcgccacgatc
gcccagcacacggagatgggcgcgggcatgtacgtcgcgatgaaggacctcgagatccgc
ggcgcaggcaatttgctcggcggcgaacagtcgggccacatcgcgggcgtcggcttcgac
ctgtacgtccgcatggtcggtgaggcggtcgccgactaccgcgcctcgctggagggcggt
gtggaggaggagcccccgctcgaggtcaagatcgaactccccgtcgacgcccacgtcccg
cacgactacgccccgggcgagcggctgcggctccaggcgtaccgggcgatcgcctccgcc
aacacggaggaggacatcaaggcggtccgcgaggaactcaccgaccgctacggcaagctg
ccggagcccgtggagaacctcctgctggtcgccggtctgcggatgctcgcccgtgcctgc
ggcgtcggcgagatcgtgctccaggggtccaacatccgcttcgcgcccgtggagttgcgc
gagtcccaggaactgcggctcaagcggctccatccgcgcacggtcatcaagccggccgtc
caccagatcctggtgccccggccgacgagcggcaagatcggcggcaagccggtggtgggg
cgcgaactgctggcgtggaccggcgagttcctgacgacgatcctcggctcgtag
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