Shewanella psychropiezotolerans: FM037_02840
Help
Entry
FM037_02840 CDS
T07745
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
spsh
Shewanella psychropiezotolerans
Pathway
spsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FM037_02840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spsh03019
]
FM037_02840
03016 Transfer RNA biogenesis [BR:
spsh03016
]
FM037_02840
Enzymes [BR:
spsh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FM037_02840
Messenger RNA biogenesis [BR:
spsh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FM037_02840
Transfer RNA biogenesis [BR:
spsh03016
]
Prokaryotic type
tRNA degradation factors
FM037_02840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
QDO82370
LinkDB
All DBs
Position
647073..649562
Genome browser
AA seq
829 aa
AA seq
DB search
MIKDPHLKREQENYENPIPSREFILEYLRSEKSPLNRERIAQELKLESEEQLEALRRRLR
AMERDGQLVFTRGQAYGLPERMDLLTGTIIGHRDGFGFLKLEEGGDDLFINNRDMMMYFH
GDKVLAQKAGVDRKGRREARIVRLVEQRAAALVGRFHLDSGMAFVIADDRRIGQEILIAD
EDRNGARQGDVVVLELTRRPGRYVKAAGKVTEVLGKQLAPGMEIEIALRNYDLPHTWSSQ
IEKKLRAIPDEVTEADKEDRVDLRHLPLVTIDGEDARDFDDAVYAEAKKSGGWRLWVAIA
DVSHYVRTESALDKEARSRGNSVYFPSQVIPMLPEKISNGLCSLMPEVDRLCMVAEMTIS
AAGKLSGYKFYPAVMHSHARLTYTQVADMLEGGEVSDKLKPIFPHLQTLQSLYLTLDVTR
AQRGAIAFETTETQFVFNADRKIDSIVPRNRNQAHKIIEECMILANVASAKFVKKHKGEV
LYRVHESPSEQKLSNFKDFLKERGLTMGGGLEPTPTDYQALMESITDRPDAELIQIMLLR
SMKQAVYTPDNEGHFGLALEAYSHFTSPIRRYPDLILHRVIRFLLAKEQGETTEKWTPGG
GYNYQLEELDLLGVECSTTERRADEATRDVSDWLKCEFMQDHVGDTFDAVVASVTHFGMF
VRLDKLFIDGLVHISSLGSDYYQYDNMRQRLVGESSGQVYQIGDKVTVKVASVNLDDRQI
DLMMEGEEGKSKRPSRGKKPMTARERVNAEGAKLGKADKSGKPKRRGSRSKSAAGKASAD
SAKTNTSGGAKKSGANTKTTAKKSKAKKSSAKKASVKKSPAKRKAKASK
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaagatccgcatttaaagcgtgaacaagaaaattacgaaaaccccattccaagc
cgtgagtttattttagaatacttacgatcagaaaaatccccgttaaaccgtgaacgcata
gcacaggagcttaaactcgaaagtgaggagcagcttgaggcgcttagacgtcgattgcgt
gccatggagcgggatgggcagcttgtgtttacccgtggacaggcctacggcctccctgag
cgtatggacctgcttaccggtacaattatcggtcacagagatggttttggcttcttgaag
ctggaggagggcggtgacgacctctttatcaataaccgtgacatgatgatgtactttcac
ggcgacaaggtgctggcacagaaagccggagtcgatcgtaaggggcgccgcgaagcccgt
atcgtacgcctggtcgaacagagagctgccgccctagtgggacgtttccatctggattcc
ggcatggctttcgtcatagccgatgaccggcgcataggtcaagagatactcattgccgat
gaggaccgtaatggtgctcgccagggtgatgtagtggtgcttgaattgactcgtcgtccg
ggccgctatgtgaaggctgcaggtaaagttaccgaagtcttaggcaagcagcttgctccg
ggtatggagatcgagattgccctgcgtaactacgatctgccacatacctggtcgagtcag
attgagaagaagctgcgcgctattcccgatgaagtgactgaagctgacaaagaggaccgg
gttgatttacgtcacttgcctttagtgactattgatggcgaagatgcccgagatttcgac
gatgccgtttatgccgaagcgaaaaagagcggtggctggcgtctttgggtagcgattgcc
gatgtgagccattatgtgcgcaccgaatcggcgttagataaggaagcacgtagtcgagga
aactcggtgtatttcccatcacaagttatccctatgctgccggaaaagatctctaatggc
ttatgttctttgatgccagaggtcgatcgcttatgtatggttgccgagatgactatctcc
gcagcaggtaagctctcaggatataaattctatccggctgttatgcattctcatgcccgt
ctgacttatacccaggttgccgatatgctcgaaggcggagaggtgagtgataaactcaaa
cctatattcccgcatctgcagacgttgcaatctctgtatctgactctggatgtgacacgt
gcgcaacgaggcgctatcgcatttgaaactactgagactcagtttgttttcaatgcagat
cgcaagattgacagcatagtaccgagaaatcgtaaccaggcccataagatcatcgaagag
tgcatgattttggctaacgtggcatcggccaagttcgtcaagaagcacaaaggcgaagtc
ttataccgggtgcatgagtctccatctgagcagaagctgagtaactttaaagacttcctc
aaggaacgtggcttgaccatgggtggggggcttgagcctacaccgaccgattatcaggcg
ctgatggaatcgatcacagataggcccgatgccgagcttatccagatcatgttactacgt
tccatgaagcaagcggtttacacaccggataatgaaggacactttggtctagccttagaa
gcatactctcactttacttcgcctattcgtcgttatccggatcttattctgcatcgggtt
attcgcttcctgctggcgaaagaacagggagaaacgacagagaaatggacgcctggtggt
ggttataactatcagctagaagagttagatcttcttggtgtcgagtgttcgaccacagag
cgccgcgccgatgaggcgacccgtgatgtcagcgattggctcaagtgtgagtttatgcaa
gatcacgtgggcgataccttcgacgctgtagtggcctcggtaactcatttcggcatgttc
gtccgtcttgataaactctttatcgatggcttagtgcatatctcaagtttgggtagcgat
tactaccaatatgataatatgcgtcagcgtctggtgggtgaatcatccggtcaggtatac
cagataggtgacaaggtcacggtgaaggtggctagcgtcaatctggatgacaggcagatt
gacttgatgatggaaggtgaggaaggtaagtctaaacgtccaagccgtggcaagaagcca
atgactgccagagagcgagtcaatgcagagggcgctaagctaggcaaagcagataagagc
ggtaaacctaaacgacgcggttctcgctcaaaatcagcggcgggtaaagcttctgccgat
tcagctaaaaccaatacaagcggtggagctaaaaagtccggcgctaacacaaaaacgacg
gctaagaagtcgaaggctaaaaagtcttcagcaaaaaaggcttcagtaaaaaagagcccc
gctaagcgtaaagccaaagcaagcaagtaa
DBGET
integrated database retrieval system
