Shewanella psychrotolerans: K0I62_11690
Help
Entry
K0I62_11690 CDS
T09306
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spsj
Shewanella psychrotolerans
Pathway
spsj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spsj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K0I62_11690 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spsj03400
]
K0I62_11690 (mfd)
Enzymes [BR:
spsj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K0I62_11690 (mfd)
DNA repair and recombination proteins [BR:
spsj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K0I62_11690 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
QYK03306
LinkDB
All DBs
Position
2670216..2673698
Genome browser
AA seq
1160 aa
AA seq
DB search
MNAFSVLTPPKVKGVKTPQTLSQLHGAAQAITLANIGANYNGLTLVVTHDTPSALQLETE
LKYLLKPASVPVLLFPDRETLPYDSFSPHQDLVSQRLETLSRISIEKQSLVIVPISTLMV
RLPPQSFLTGNVLLLNKGDIYQLEQVRQQLVNTGYHLVEQVYEHGEFAVRGSIIDIFPMG
SNNPYRIELFDNEVESIRQFDPETQRSSAEIEGIRLLPAKEFPTDDAAIEGFRQRYRRQF
DVVVKEPESIYQMVSRKVMPAGIESYLPLFFDETATLFDYLPEQTQLVALGDLETAAKSH
LNEVAQRYENRRVDPLRPLLPPKDLYLLAEQVFQAFKQLPRLLCKGRDFQGTSIPAKVEA
LPDIASNHKLKQPLIALQEYASSGISILFCAESEGRREALIELLAKIEIKPQLFDHFNQF
VENPAQFGLIVSPLSQGAIISGSKGKPWALVCETELFGQRISQQRRRDKQRQISSDALIK
DLAELKVGQPIVHLDHGVALYQGLETLDTGGLVAEYLKLEYSGGDKLYVPVSSLNLISRY
SVGPDEEAHLNKLGNETWSKAKRKAIEKIRDVAAELLDVYARRQARPGEACQLDQQEYAQ
FASSFPYEETVDQEMAIDAVLTDMCSPTSMDRLVCGDVGFGKTEVAMRAAFVAVNDNKQV
AILVPTTLLAQQHYENFKDRFADWPIKIEVLSRFKTAKEQQVVLDQLTNGQVDIVIGTHK
LLQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANIDILTLTATPIPRTLNMAMSGMRD
LSIIATPPAKRLAVKTFVREYDDATVREALLREILRGGQVYFLHNNVETIEKRARELEDL
LPEARVVTAHGQMRERDLEKVMADFYHQKYNVLVCTTIIETGIDVPSANTIVIERADHFG
LAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTKDARKRLEAIGALEDLGAGFMLATQDLEI
RGAGELLGDEQSGHISKIGFTLYMEMLEDAVKSLKEGREPSLDQMLRGQCEIDLRIPALL
PEDYVHDVNVRLSIYKRIANSKSETALDELKVELIDRFGLLPQATKNLLELTLYKHQATA
LGIAKIEMHAKGGSMEFRDDHIIDPGFIIGLLQSQPQNYRMDGPSKLKFLMPTEADKDRL
ALLSLIISQLMQHRLGELRA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgaatgctttctctgtcctgacgcccccaaaagttaaaggggtaaaaacgcctcaaacc
ctaagtcaattgcatggtgctgctcaagcaatcaccttagcgaatatcggcgctaattat
aacggtttaaccttggtcgttacccatgacacgcccagcgcgctgcaactggaaactgaa
cttaaatatctgcttaaaccggcatctgtcccagtactcctgttcccagacagagaaacc
ttgccttatgacagtttctcaccccatcaagatctggtatcacaaagattagagacacta
tctcggatctccatcgaaaaacagagtctggtgattgttccaataagcaccttgatggta
agactaccgccgcaatcatttctaacgggtaatgtgctgctgctcaacaagggcgatatc
taccaactcgagcaagtgcgtcagcagttggtgaataccgggtatcacctagtcgaacaa
gtttatgaacatggtgagtttgccgtacgaggctctatcatcgatattttcccgatgggc
tccaataacccctatcgtatagaactcttcgacaatgaagttgaatctattcgccagttt
gatcctgaaactcagcgttcaagtgctgaaatagaggggattcgactactaccagcaaaa
gagtttcccactgatgatgcggctatagaaggatttagacagcgttatcgtcgtcagttt
gatgtggtcgttaaagagcctgaatcaatctatcagatggtcagtcgcaaagtgatgcct
gcaggtattgaaagttatctgccactgttttttgatgaaacagccaccctgtttgattac
ctaccagaacagacacaactggtcgccctcggagatttagaaacagcggcgaaatcccat
cttaatgaagtcgctcagcgttatgaaaatcgtcgcgttgatcctttaagacccttatta
ccaccgaaagatctttatttacttgcagagcaagtatttcaagcgtttaagcaattgcca
aggctactgtgtaaggggcgagatttccaaggcacgagtattccagccaaagttgaagca
ttgccagatatcgcctcaaatcataaattgaaacagccgcttatcgcgctgcaagagtat
gcaagctctggcatttcaatcctgttttgcgccgaatcggaaggccgacgcgaagcgctc
atagagctgcttgctaagatagagataaaacctcaactatttgatcacttcaatcaattt
gttgaaaatccagcacaatttggtcttatcgtttcgcccctgtctcaaggggctattatt
agtggtagcaaaggcaaaccatgggcgctagtgtgtgagaccgagcttttcggtcaacgt
atctcgcaacaacgcagacgagataagcagcgccagatcagcagcgatgcattaattaaa
gacttggccgaacttaaagtcggtcagcctatcgtacatttagatcatggtgtggcgctc
taccaagggttagaaaccctcgacaccggagggcttgttgccgaatacctcaaacttgag
tattcaggcggcgataagctctatgtccccgtctcttcccttaatcttattagtcgctac
agtgttggccccgatgaagaagcccatctcaacaagctgggtaatgaaacctggagcaaa
gcaaaacgcaaagcgattgaaaagatccgtgatgttgcagcagagctacttgatgtttat
gccagaagacaagctaggccgggtgaagcttgccagctcgaccaacaagaatatgcgcag
tttgccagtagctttccctatgaggaaaccgtcgatcaagaaatggctatcgatgccgtg
ctcaccgacatgtgctcgccgacttcaatggatcgcttggtctgtggtgacgttggtttc
ggtaaaaccgaagtcgcaatgcgcgcggcatttgtggctgtaaatgataataagcaggtt
gctattttagtgccgactaccctgctcgctcagcaacattatgagaactttaaagatagg
tttgccgactggccaatcaagattgaagtattatcgcgttttaaaaccgccaaagagcaa
caagtggtactcgaccaattaaccaatggccaggtcgacatcgtcatcggcacccataaa
ctgctgcagtccgaagctaaatttgaaaatttaggcctactgatcatcgatgaagaacac
cgctttggtgtaagacaaaaagaaaaaattaaggcccttagagcaaatattgatatttta
acgcttacggcgacaccgatccctagaaccctcaatatggccatgtctggtatgcgagat
ctatcaattattgcgaccccgcccgctaaacgattagcggtcaaaacctttgtgcgagag
tatgacgatgcaacggtacgcgaggcgctattgcgtgagatcttaaggggtggtcaggtt
tattttctgcacaacaacgtcgaaaccattgagaaacgcgcacgagaactcgaagatcta
cttcctgaagctcgggttgtcaccgctcatggccagatgcgtgaacgggatctggaaaag
gtgatggctgatttttatcaccaaaaatacaatgtgttagtgtgtacaacgatcattgag
actggtatcgatgtgccaagtgccaacacaatcgtgatagaacgcgccgatcactttggc
ttagcgcaactacatcagcttcgtggtcgtgtgggtcgttctcatcatcaagcctacgcc
tatttgatgaccccgcacccgaaacgaatgaccaaagatgcgcgcaaacgactcgaagcg
attggtgccctagaagatcttggcgcaggttttatgctagcaacgcaagacttggagatc
cgtggtgctggtgaactcttaggtgatgagcagagtggccacatttctaagataggtttc
accctatacatggagatgttagaagacgcggtgaaatcattaaaagaaggaagagaacca
tcactcgatcagatgctccgaggccaatgtgaaattgaccttcgcattccagccttactg
ccagaagactatgttcatgacgttaatgtccgtttatcaatctataaacgcatagccaac
agtaaaagcgaaacagcacttgatgaactaaaagtcgaactgatcgaccgctttggccta
ttgccacaagctacaaaaaatctattagagttgaccctatataaacatcaagcaacggca
ttaggcatagccaaaatagaaatgcacgccaaaggcggaagcatggagtttagggacgac
catattatcgatcctggctttattattggcctattgcagagtcagccacaaaattatcgt
atggatggcccaagtaagttaaaattccttatgcctacagaagcagataaagatcgttta
gccttattgtcgctaatcatctcacagcttatgcaacatcgtcttggagaactacgtgct
taa
DBGET
integrated database retrieval system
