Shewanella psychromarinicola: EGC80_17040
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Entry
EGC80_17040 CDS
T09848
Name
(GenBank) efflux RND transporter permease subunit
KO
K18138
multidrug efflux pump
Organism
spsr
Shewanella psychromarinicola
Pathway
spsr01501
beta-Lactam resistance
spsr01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
spsr00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
EGC80_17040
01503 Cationic antimicrobial peptide (CAMP) resistance
EGC80_17040
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
spsr02000
]
EGC80_17040
01504 Antimicrobial resistance genes [BR:
spsr01504
]
EGC80_17040
Transporters [BR:
spsr02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
EGC80_17040
Antimicrobial resistance genes [BR:
spsr01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
EGC80_17040
BRITE hierarchy
Motif
Pfam:
ACR_tran
MMPL
Motif
Other DBs
NCBI-ProteinID:
AZG36405
LinkDB
All DBs
Position
complement(3909699..3912794)
Genome browser
AA seq
1031 aa
AA seq
DB search
MILTDLSVKRPVFASVISILLIVLGLVSFGKLPLREYPNIDPPIVSVETSYRGASASVVE
SRITQLIEDKISGVEGIRHISSSSSDGRSNVTIEFDINRDIEAATNDVRDRISGLLEQLP
EEADAPSIYKANGSDEVIMWLNLVSDQMDILQLTDYANRYLVDRFAVIDGVSTLRLGGGK
VYALRIWIDRQALASRNLTVSDVEDALRSENVELPAGSIESKDRHFTVRLDRVFKTANDF
SNLVIKQGEDGYLIKLSDVAKVEIGSEEERIIFRGNKEAMIGLGVSKQSTANTLDVARAA
NILVDKLNPTLPAGMKIKRSYDSSVFIEASIAEVYKTLFIAMVLVIIVIYLFLGSVRAML
IPAITVPVSLMGTFIVLYALGYTINLLTLLAMILAIGMVVDDAIVMLENIHRRIEEGDSP
LKAAFLGAREVAFAVLATTLVLVAVFMPITFLEGDLGKLFKEFAVTMSAAVIFSSIVALT
LSPMMCSKLLKPANQDPWLVKQVDKMMSKLSSWYLISLQAGMKKPILVSLIVLFSFALSG
FLLNKIPQEFAPQEDRGSMFLIVNGPQGASFEYIEKYMDEVEGRLMPLVESGEIKRLLIR
APRGFGTSADFSNGMAIIVLEDWAERRSANEIIVDIRNRLSDLAGIRAFPIMRQAFGRGV
GKPVQFVIGGPSYEELAEWRDIMLDKAKENHKIIGLDHDYQETKPQLRVVIDRERAADLG
VSISHIGRTLESMLGSRLVTTFMRDGEEYDVIVEGNRDNQSTATDMENIYVRSDRSQELI
PLSNLVSVEEFADASSLNRYNRMRAITLEANLADDYTLGESLDYLNELAVTYLPAEAVIS
YKGPSLDYQESGNSMNFVFLLALGIVFLVLAAQFESYIHPLVIMLTVPLATLGALIGLWF
TDQSINIYSQIGIIMLVGLAAKNGILIVEFANQLRDRGVEFQQAILQASTQRLRPILMTG
ITTAAGAIPLVLSSGAGAETRFVIGVVVLSGILLATFFTLIVIPVAYSLFARNSSSPQAV
AKQLEIELQDD
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atgatcttaactgacttatcggttaaaagaccggtttttgcatctgttattagtatctta
ctgattgtattaggtttagtatcattcggtaaattacccttgcgggagtacccaaatatt
gatccgccgattgtgtcggtcgagaccagttatcgtggcgccagtgcttctgtcgtcgag
agtcgaattacccaacttatcgaagacaagatcagtggtgtagaagggatacgtcatatt
agttcttccagtagtgatggccgttcaaatgtcactattgagtttgatattaatcgagat
attgaggctgcgaccaatgatgtgcgcgaccgcatctctggtttattagagcagcttcca
gaagaagccgatgcgccatccatttacaaagccaacggcagcgacgaagtgattatgtgg
ctgaatttagtgtccgatcaaatggatatcttgcagcttacggattatgccaatcgttat
ttagtcgatcgttttgccgtaattgatggggtgtcgacattacgtttaggtggcggcaag
gtgtatgccttgcgaatttggattgaccgtcaagcgttagcttcgcgcaatctaaccgtc
tctgatgttgaagatgcgttacgctctgaaaatgttgaattgccagccgggtcaatcgaa
tcgaaagatcgtcactttacggtgcgcctagacagggtatttaaaacggcgaatgacttt
tctaacttagtgatcaagcaaggtgaggacggttatttaattaaattaagtgatgtcgcc
aaagtagaaattggttccgaggaagagcgtattatcttccgaggcaacaaagaggcgatg
attggcttaggcgtcagtaaacaatctacggctaataccctggacgtcgcgcgcgcggcg
aatatcttggtagacaagcttaacccaacattgccagccggcatgaagattaaacgatca
tatgacagctcagtgtttattgaagcctctattgctgaggtttataaaacactgtttatt
gccatggtgttagttattatcgttatttacttgtttttaggttccgtgcgagcgatgtta
attccagccatcactgtgcccgtatctttaatggggacctttatagtgctatatgcacta
gggtataccatcaacttactgacattgttggcgatgatcctcgccattggcatggtggtc
gatgatgccattgtgatgctcgaaaatattcatcgacgtattgaagaaggcgattcaccg
ttaaaagcagccttcttaggcgcgcgtgaagtggcatttgccgtgttggcaacaaccttg
gtacttgttgctgtgtttatgccgatcaccttcttagagggtgatttaggcaagctgttt
aaagagtttgcggtcaccatgagcgcggcagtgattttttccagtattgtggcgttaacg
ttaagcccgatgatgtgctcaaaattattaaaacccgcaaaccaagacccgtggttagtt
aaacaagtcgataagatgatgagtaagctatcaagttggtatttgataagtttacaagcg
ggcatgaaaaaaccgattttagtgtcattaattgtactgttctcgtttgcattaagtggg
tttttattgaataaaatcccccaagaatttgccccacaagaagaccggggttctatgttt
ttaattgttaatggtcctcaaggcgcaagctttgaatacattgaaaaatacatggatgaa
gtcgaaggtcggttaatgccactggttgaaagcggcgaaattaagcgcttattgatccgt
gcccctcgtggttttggaacctctgctgatttttcaaatggtatggcgatcattgtgctc
gaagattgggctgagcgccgcagtgctaatgaaattattgtcgatatccgtaatcgctta
tcagatttagccggcattcgtgctttcccgattatgcgccaagcgtttggtcgcggtgtg
ggtaaacctgtgcagtttgttatcggtggtccaagctacgaagaactggcggagtggcgt
gatattatgcttgataaagccaaagagaatcataaaatcattggtttagatcacgattat
caagaaaccaaaccacagttgagagtggtaattgatcgggaacgcgcggcagatttaggt
gtgtcgatttcccatattggcagaacattagagtcaatgctggggtcgcgcttggtcaca
acctttatgcgcgatggcgaggagtatgatgttattgttgaaggtaatcgtgataatcaa
agtactgcgactgatatggagaacatttatgttcgttctgaccgctcgcaagaactgatc
ccgttatcaaacttagtctcggttgaagagtttgccgatgcgagttcgttaaatcgctac
aatcgtatgcgtgccatcacgttagaagccaacttagcagatgattatactctgggtgaa
tcgttagattatctcaatgaacttgctgtgacgtatttacctgcagaagcggtgatcagt
tataaaggtccatcgttagattaccaagagtcgggtaactcgatgaactttgtattctta
ctagcattgggaattgtttttttagtgcttgcggcacagtttgaaagctatattcatcct
ttggtgattatgttaactgtaccactcgcgactttaggtgcgctaattgggttatggttt
acagaccaaagtatcaatatttacagtcaaattggaattatcatgctggttggcttggct
gctaaaaacggtatcttaatcgttgaatttgccaatcaattacgcgaccgaggtgttgag
tttcaacaagcgattttacaagcttcgactcaacgtttacggcccattttaatgaccggt
attaccactgctgcaggcgctattccattagtgttgtccagtggagcaggggctgaaact
cgatttgtaataggggtagtggtgttgtcaggtattttactggcgactttctttaccttg
attgttattcctgttgcttatagcttatttgcccgtaatagcagctcaccgcaagcggtg
gcgaagcagttagaaatagaattacaagacgactaa
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