Shewanella psychrophila: Sps_00522
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Entry
Sps_00522 CDS
T05063
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K19789
DNA repair protein RadD
Organism
spsw
Shewanella psychrophila
Brite
KEGG Orthology (KO) [BR:
spsw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spsw03400
]
Sps_00522
DNA repair and recombination proteins [BR:
spsw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
Sps_00522
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
Helicase_C
DEAD
SWI2_SNF2
AAA_30
AAA
SLFN-g3_helicase
AAA_22
ERCC3_RAD25_C
AAA_16
Helicase_C_2
MgtE_N
DZR
Motif
Other DBs
NCBI-ProteinID:
AQS35720
UniProt:
A0A1S6HJM6
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Position
complement(544944..546722)
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AA seq
592 aa
AA seq
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MLCHRYFEQQIFVQLRDYQQQAVDSAVQHFKTSPDSAVLVLPTGAGKSIVIAELARIANG
RVLVLTHVKELVAQNAEKVGILTTAAGIYSAGLNQKSTEDKTIVASIQSAVRAPEKFTTP
FSLVIIDECHRISQDKDSQYQQLLIHLKNINSKIRLLGLTATPYRLDLGWIYRHHYHGKV
GNPDKAVFEQCIFELPMRPLIKRGYLSTPKIFDGLSAQYDFSSLKTSTSGQYQEAKVNDL
LSHCGRATTAIVKQLIQIGGSRQGVIIFAATVRHAEEILKLLRKEQAALITGKTSTEQRD
SLIEEFKAKKIKYLINVAVLTTGFDAPHVDLIAILRPTASVSLFQQMVGRGLRICEGKSE
CLIIDYAANGYDLYFPEVGQNKPNSKSVPVQVHCPVCDFANIFWGLVDDDGDIIEHFGRR
CQALIEQDDQKNQCDFRFRSKACPNCSEENDIAAKICHSCDAMLIDPDKRLKEVLQQKHH
HLFKCDAMLFEEEKDKLKIRYIDIDGNDFCQYFNFQTKAQIRAFYAIFVLSHTRTPGLKH
PRYNKVQEVIATRELFRKPDMLLLKKHKKGWDLQETFFDYQGRYQTENKFLQ
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgctttgccatcggtattttgaacagcagatttttgtgcaattaagagactatcaacaa
caagcggtcgactcggcggtacaacatttcaagacaagcccggactcggccgtactggtg
ctgcctacgggagcgggtaaaagcatagtaattgccgagctagcccgaatagccaatggc
agagtcttagtcttaacccatgtcaaagagctcgttgcacaaaatgcagaaaaagtcggt
atattgaccaccgccgccgggatctattctgctggcttgaatcaaaaatccaccgaagat
aaaaccatagtcgccagcatccaatctgcggtgagagcgccggagaagtttaccacccca
ttttctctggtgatcatagatgaatgtcacaggataagtcaggataaagacagccaatac
caacagctgctgatacacctcaagaacatcaattccaaaataaggctgttaggactcact
gcaaccccctatcggctagatctcggttggatctatcgtcaccactaccatggcaaggta
ggcaacccagacaaggcagtatttgaacaatgcatcttcgagctacccatgcgcccctta
ataaaacgcggctacctgagcacacctaaaatattcgatggtctcagtgcccaatatgat
ttcagctcccttaagacctctacgagcggccaatatcaagaagccaaagtcaatgaccta
ctcagtcactgcggtcgggcaacaacagctatcgtgaagcaactgatacagataggcggc
agcagacaaggtgtgattatctttgccgccactgtgcgtcacgccgaagagatactcaaa
ctattacgtaaagagcaagcagccctgatcacaggcaaaaccagtacagagcagcgcgat
agcctgattgaagagtttaaggccaaaaagattaagtacctgataaacgtcgccgtgtta
accacaggcttcgatgccccccatgtggatctgatcgccatcctacgcccgacggcttca
gtaagccttttccagcagatggtcggtcgaggcttaaggatatgtgagggaaaatctgag
tgcctaatcatagattatgccgccaacggctacgatctctattttcctgaagtgggtcaa
aacaagccaaacagtaaatctgtaccggtacaggtgcattgccctgtctgtgattttgct
aatattttctgggggctggtcgatgacgatggagatattatcgagcactttggccgacga
tgtcaggcgttaatcgagcaagatgaccaaaagaaccaatgcgatttccggtttagatct
aaagcctgtccaaactgcagcgaagaaaatgatatcgcggccaaaatctgtcacagttgc
gatgccatgctgatcgatcctgacaagcgcctcaaagaagtgctgcaacaaaagcatcat
catctgtttaaatgcgatgccatgttattcgaagaggaaaaagacaaactcaaaatcaga
tacatagatatcgacggcaatgatttttgtcagtatttcaattttcagaccaaggcgcag
atccgcgccttctatgccatattcgtgttatcacacacccgaacacctgggctaaagcat
ccaagatacaacaaggtacaagaggtaattgcaacccgagagctatttcgtaaaccagat
atgctgctactcaaaaagcataaaaagggctgggatctacaggaaaccttcttcgattat
caaggccgctaccaaactgagaataagtttctccaatag
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