Shewanella psychrophila: Sps_05185
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Entry
Sps_05185 CDS
T05063
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
spsw
Shewanella psychrophila
Pathway
spsw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spsw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sps_05185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spsw03019
]
Sps_05185
03016 Transfer RNA biogenesis [BR:
spsw03016
]
Sps_05185
Enzymes [BR:
spsw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Sps_05185
Messenger RNA biogenesis [BR:
spsw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Sps_05185
Transfer RNA biogenesis [BR:
spsw03016
]
Prokaryotic type
tRNA degradation factors
Sps_05185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
AQS40254
UniProt:
A0A1S6HXU7
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All DBs
Position
complement(5833072..5835561)
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AA seq
829 aa
AA seq
DB search
MIKDPHLKREQQNYENPIPSREFILEYLRSEKSPLNRERIAQALKLESEEQLEALRRRLR
AMERDGQLVFTRGQAYGLPERMDLLTGTIIGHRDGFGFLKLEEGGDDLFINNRDMMMYFH
GDKVLAQKAGVDRKGRREARIVRLVEQRAAALVGRFHLDSGMAFVIADDRRIGQEILIAD
EDRNGARQGDVVVLELTRRPGRYVKAAGKVTEVLGKQLAPGMEIEIALRNYDLPHTWSGL
IEKKLRAIPDEVTDADKEGRVDLRHLPLVTIDGEDARDFDDAVYAESKKSGGWRLWVAIA
DVSHYVRTESALDKEARSRGNSVYFPSQVIPMLPEKISNGLCSLMPEVDRLCMVAEMTIS
AAGKLSGYKFYPAVMHSHARLTYTQVADMLEGGEVSDKLKPIFPHLQTLQSLYLTLDETR
AQRGAIAFETTETQFVFNDDRKIDSIIPRNRNQAHKIIEECMILANVASAKFVKKHKGEV
LYRVHESPSEQKLTNFKDFLKERGLSIGGGLEPTPTDYQALMELITDRPDAELIQIMLLR
SMKQATYTPDNEGHFGLALEAYSHFTSPIRRYPDLILHRVIRYLLAKEQGEASEKWTSDG
GYNYQLEELDLLGVECSTTERRADEATRDVSDWLKCEFMQDHVGDTFDAVVASVTHFGMF
VRLNKLFIDGLVHISSLGSDYFQYDNMRQRLVGEASGQIYQLGDAVTVKVAGVNLDDRQI
DLMMAGEEGKSKRPSRGKKPMTARERVNAEGAKLGKAEKSGKPKRRGSRSKVAAGKASAD
SDKTNTSGGAKKPGAKTKTTAKKSKAKKSSAKKTSVKKSPAKRKVKASK
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaagatccgcatttaaagcgtgaacaacaaaattacgaaaaccccattccaagc
cgtgagtttattttagaatacttacgatcagaaaaatccccgttaaaccgtgaacgcata
gcacaagcgcttaaactcgaaagtgaggagcagcttgaagcgctaagacgccgattacgt
gccatggaacgggatgggcagcttgtatttacccgtggacaggcctacggcctccccgag
cgtatggacttactgactggtactattattggtcatagagatggttttggcttcttgaag
ctggaagagggcggtgacgacctcttcatcaataaccgtgacatgatgatgtacttccac
ggggacaaggtactggcacagaaggccggagtcgatcgtaagggacgtcgcgaagcacgc
atcgtgcgcctggtcgaacagagagctgcagccttagtgggacgtttccacctggattct
ggcatggcgtttgtcattgccgatgacaggcgtataggtcaagagatactcattgccgat
gaggaccgtaacggtgctcgtcaaggtgatgtcgtggtactcgaattgacacgtcgtccg
ggccgttatgtgaaggcggctggtaaagtgacagaagtgctgggtaagcagctagcccct
ggtatggaaattgaaattgctttgcgtaattatgacctgccacatacctggtcggggcta
attgagaagaagctacgtgctattcccgatgaagtcaccgacgctgataaagaggggcga
gtcgatctacgtcacttgcctttagtcactatagatggcgaagatgcccgtgatttcgac
gatgcagtttatgctgaatcgaaaaagagcggtggctggcgtttatgggtggcaattgcc
gatgtgagtcactacgtacgtacggaatctgcattagataaggaagcacgtagtcgaggt
aactcggtgtacttcccgtcgcaagtgatccctatgctgccggaaaagatctctaatgga
ttatgctccttgatgccagaggtcgaccgtttatgtatggtagccgagatgactatctcc
gcagcaggtaaactctctggatataagttctatccggcagttatgcattcccatgctcgt
ctgacctatactcaggttgccgatatgctcgaaggtggagaggtgagtgataagctcaaa
cctatattcccgcaccttcaaacattgcagtccctgtatctgacgttagatgaaacacgt
gcacagagaggcgctatcgcattcgagaccactgagactcagtttgtctttaatgacgac
agaaagattgacagcataataccgagaaatcgtaatcaggctcataagatcatcgaagaa
tgcatgatcttagccaacgtagcttcggctaagttcgtcaaaaagcacaagggcgaggtc
ttgtaccgggttcatgagtctccatctgagcagaagctgactaacttcaaagacttcctc
aaggagcgtggcttgagcatcggcggagggcttgagcctacaccgaccgattatcaggcg
ctgatggaattgatcaccgacagacccgatgcagagcttatccaaattatgttgctgcgc
tctatgaagcaagcgacctacacgccggataacgaaggacactttggtttagccttagaa
gcttattctcactttacctcgcctattcgtcgttacccggatttgatcttgcaccgggtt
attcgttacttgttggcgaaagaacagggcgaggcgtcagagaagtggacgtcagatggt
ggttataactatcagctagaagagctagatcttctcggtgtcgagtgttcgactaccgag
cgccgcgccgatgaggcgacccgtgatgtcagtgattggctcaaatgtgagtttatgcaa
gatcacgtgggcgataccttcgacgctgtggtggcctcagttactcacttcggcatgttt
gtccgtctgaataagttatttatcgatggtttagtgcatatttccagtcttggtagcgat
tacttccaatatgataatatgcgtcaacgcctagtgggagaagcctcaggtcaaatctat
caacttggtgatgccgtcactgtaaaagttgctggtgtgaatttagatgatcgtcaaatt
gatctgatgatggcgggtgaggaaggtaagtctaaacgtccaagccgcggcaagaagccg
atgactgccagagagcgggtcaatgcagagggcgctaagctaggtaaagcagaaaagagc
ggtaaacctaaacgacgcggttctcgctcaaaagtcgcggcgggtaaagcttctgctgat
tcagataaaaccaatacaagcggtggagctaaaaagcccggtgctaaaacaaaaacgacg
gctaagaagtcgaaggctaaaaagtcttcagcaaaaaagacttcagtaaaaaagagccct
gctaaacgtaaagtcaaagcaagcaagtaa
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