Strongylocentrotus purpuratus (purple sea urchin): 575353
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Entry
575353 CDS
T01019
Name
(RefSeq) collagen alpha-1(I) chain
KO
K19719
collagen type II alpha
Organism
spu
Strongylocentrotus purpuratus (purple sea urchin)
Pathway
spu04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
spu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
575353
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
spu00536
]
575353
Glycosaminoglycan binding proteins [BR:
spu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
575353
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Amnionless
Motif
Other DBs
NCBI-GeneID:
575353
NCBI-ProteinID:
XP_030828883
LinkDB
All DBs
Position
Unknown
AA seq
2794 aa
AA seq
DB search
MYSFVDQLRQHRRKLLLLCVALATLAVICEAQESSFSVSLSSGEPLLPCVYRGIPYLHGE
EWKVDECTTCACDNATTTCVIESCQPAFCAEPIKPEGECCFLCPYNVRVRRVTPEITSSN
TIAEGGDNSLVLDIPIKFQEAQDTTGVVGENLWRLSMWASATPDGRGARFGYQRNVIDEE
QMSKYYKKKEAFAFRDVEYNFNDPMAECSDMNYICARIDRGDNPTTKGNLGYEFSGWPDE
YAQIGCTGAPECKGIVAEDMDWTLEPLETVIPGQPTSVSIDNNVAFRAGNPTLSGMGLWR
MGVFGSRNMQGTGDKFGYVSQTLSRPQQSTTLEENDALEVMDAVTDFEIGSIGCNDYGYV
CVDFTGGDAPSPTYFFRVAGAIDSTRAANTLVKCKEQECLANLWAESLDWSLTPTGRVLP
GQESEVSIASNVMFEMDNRPVEGQGLWRQGIYGSRNRDGTGEKFNYKTQTLDRMQEALPL
EQDSSLEIPEAMTEFEIGTVGCNDFGYVCVEFTGGDDPEPLYYFRVVGSPTDKSEDNTLV
LCKEQECLSRAIFTDLEADLGEQVIVENKNNPLTVDLTGITHDDSTNVVGEELWLVGAYA
SMNPEGTGTKTGYVEQILDLDGSATDLNDDENLMMDGKDFEFDMTGIRCAEAPYLCFDLD
KNPRASVSYIFEDRPDESVTTTCIDMRERCKGAVARDIEWEAEIGDAPFGQPSPLTIDAD
VLFDPDSPDVAGDGLWQLGVFAAKMPDGTGPRRDEVTQTLDPYNQALPLEEGGPLGFGSI
DVPFPIDELGCDDYRWLCIEFKRGESPNPDFGFTTESGEDSIISCKEQKCRGVEIDSLTS
SPTDVLTDLMLREGNADNPLTYNSVATTTDESGTVRGVDLWTLSQWGSENANGDGPQNNF
QESVLSDYFAALPVMMSGETLDFVPLVTNFDMTDLKCPQVKYICNEVNRDQGSQPEFQFT
GVPDESVLRSCFEVPDDACKGVIFDDLDWDMTPMGPVTADAPDDVLFNVDLSTLPDSGSA
DGDGLWRIGVFGAQNVDGAGPRLGYLRQILDRNEASTPAAGAGEPLELKNLATEFDLSQI
GCDSEYTFLCLEFSKGMRANPDFEFEVQGGGDVIISCKEQPCRRPVIVTDVETDLLGNGR
VNEGTRNNRILYDMTAIADPSSGKAEGRDLWEMTTFGSTFPDGRGQRFKPATAYTFTQYQ
KDRPASPGEDIRYGAVDTNFDMTGLTCNQIRYFCSELRKGEYASPDYQFVAKPDEDVLVD
CFELNCEGVVIDNTRLTLNSDDELEDGPNELNFDFRVDSNPNGGDAEGDNLWRLETFTSN
SGDGSGRRDILKQQTLDPADASTDLGAGNSMVFRNLNAMVDSADVNCEEDYYLCAEITKH
ESSSPDFSMEGSREDSTTSCKLVKCKKAEPPPVQGRPGPKGARGEPFEIPPGMVGPPGRA
GLPGTVGYRGRRGPNGLGGPPGSRGEDGRDGRSGGRGRPGPPGPPGPTGEVAAAAQTSKG
PSWNAAAFPYMRGAMAVGLPGSAGYAGTRGNRGPAGMRGPSGQSGPSGPIGSAGPRGPRG
EDGPDGDDGKNGALGQLGFPGEPGRPGSAGSPARNGAPGHKGWTGMFGRKGARGDRGESG
SAGLEGVGGSVGAIGNAGARGLPGSTGQTGQKGIVGERGSTGEVGDNGRIGNTGPMGVSG
AVGLSGAKGQVGSSGEQGTPGTVGLLGETGKRGAHGSAGAPGTPGANGDGGSMGEVGIAG
DLGLPGQNGAPGTQGTTGIEGIDGERGNPGLIGFVGVDGPRGAAGSRGQRGIVGEQGRVG
SQGESGEQGLTGPTGSRGSMGEPGPSGAPGLLGAGGLKGTLGDNGEAGAAGTPGEAGTRG
SPGSAGTPGSTGENGHPGEDGLAGSDGKTGATGSQGRDGASGAAGERGATGPPGQQGPPG
LGGESGISGSRGAPGSPGTRGEAGEEGEPGAAGQVGLPGSQGRRGDDGPQGPGGIAGLQG
QTGMDGNTGARGSRGDRGPIGQTGTMGATGEVGEQGLRGAAGLQGPGGLVGERGVDGRAG
RQGEVGLTGSGGIGGPPGLRGLQGPPGLRGGVGPTGSMGEDGDPGVSGQQGSSGRTGERG
SQGPPGPTGPGGGRGQNGESGGPGENGPDGAQGTRGILGEKGSGGPRGIPGNPGPGGAPG
ERGSAGNPGEKGEAGPSGVQGRSGRVGQAGQPGARGSRGETGLEGSVGPLGSPGMNGPTG
ARGEMGPTGNSGNNGKTGDLGQQGSRGPQGNPGLMGERGIEGLQGPTGASGESGRPGNMG
PRGPVGNSGSPGTLGSGGLGGLTGPTGPAGPAGRPGSEGAPGNPGNDGLRGDDGGKGPNG
AQGARGISGSNGRDGKDGKPGIPGMEGSRGDTGVRGSEGIAGIAGPRGVLGALGAQGERG
HRGKIGSQGSVGSHGEDGSTGPMGSVGPAGPRGETGSSGPSGHKGQNGMPGAPGAGGKAG
ESGPRGEQGSDGVRGLPGNNGANGKNGKEGPRGPPGLRGSYGTRGERGTYGTEGPPGPPG
PPGPPGEVQMSGFAFQPQQSQQSKGPSQYSHYYRDEIPKTVEELDRTKFEMYLAKFEFQI
QSMYAPIGSREMPARSCKDLFKCFPDALDGDYWIDSNEGSVKDAYLAQCVRDGADGNPET
CIHPRSATISRAPWYRGNSGHHYISQMNGLEKFSYEASEVQMTFLRLLSNKAHQNVTYHC
KNSVAVRDRQTGSTEQALRLMTTSDVELSLDAPSQEQYEVIEDGCQLRTGEWGQTVINYS
TRRNTRLPIVDVAPSDIGREDQEFGITLGPVCFS
NT seq
8385 nt
NT seq
+upstream
nt +downstream
nt
atgtatagctttgtggaccaactacgccagcacaggcggaaacttcttttattatgtgtg
gccctagcaacgcttgctgtaatatgcgaggcacaagaatcctcgttttcggtgagtctt
agttctggggagcctctgctaccttgcgtgtacagaggaatcccatacctccacggagag
gaatggaaagtagacgaatgcaccacttgtgcctgcgacaacgccacgacgacctgtgtg
attgagagttgtcagcccgccttctgcgctgagccaataaaaccggagggagaatgctgc
ttcctctgtccttacaacgtaagggtgaggagggttacccctgaaatcacgagctcaaac
acgatcgctgaaggtggagacaacagccttgttcttgatattcctattaagttccaggaa
gcacaggataccaccggtgtcgtaggagagaacctctggagactcagtatgtgggcctca
gcgacccctgatggcagaggggcaaggttcgggtatcaaagaaatgtcattgacgaggaa
caaatgtcaaagtactacaagaagaaagaagctttcgctttccgcgatgtcgagtacaac
tttaatgaccccatggcggaatgttccgacatgaattacatctgcgctcgcatcgaccga
ggagacaaccccaccaccaagggtaacttaggctacgagttttcagggtggcccgacgaa
tacgcccagatcggttgcaccggagctccagagtgtaaaggaattgttgctgaggatatg
gactggacattggagcctctggagacggtcattccaggacaaccaacatcggtcagcatt
gataacaacgtggccttccgtgcaggcaaccctactctgtccggtatgggtttgtggcga
atgggtgtctttggcagcaggaacatgcaaggtacaggcgataaattcggctacgtctct
cagaccctgagcagacctcagcagagtaccaccctggaagagaacgatgctctagaggtg
atggatgcggtgaccgacttcgagattggttccatcggttgcaatgactacgggtatgtc
tgcgtcgacttcaccggtggggatgctccaagcccaacctactttttccgtgtggccggg
gctattgattccactcgggcggcaaacaccctcgttaaatgtaaagaacaggagtgtctt
gcaaatctctgggcggaatctctagattggtcactgactccaacaggacgagttctgccc
ggtcaagaatctgaggttagcattgccagcaacgtcatgtttgaaatggacaaccggcca
gttgaaggacagggactgtggagacagggtatttacggaagcagaaaccgcgacggaaca
ggagaaaagttcaactacaagacacagacccttgatagaatgcaagaagcactccctctg
gaacaggatagctcgcttgagattcccgaagcaatgacggagtttgagattggcacagtt
ggttgcaatgatttcggctacgtttgcgtagaatttacgggtggagatgaccctgagccg
ctgtactacttccgggtagtaggatcaccgacagataagtccgaggacaatacacttgtc
ctttgcaaggagcaggagtgtttgtcgagggctatatttaccgacttggaggccgatctt
ggcgagcaggtcattgtcgaaaacaagaacaacccacttaccgtggacttgaccggtatc
acgcacgacgactccacaaacgtggtcggggaagaactctggttggttggtgcgtatgcc
agcatgaatcctgagggcactggaacaaagaccggctacgtggagcaaatcttagacctt
gacggttcagctacagacctcaacgatgatgagaatttgatgatggatggcaaagacttc
gaattcgacatgacgggaatccgttgtgcagaggccccttacctctgctttgatctggat
aagaatcctagggccagtgtcagctacatctttgaggatcgtcccgatgaatcagttaca
accacatgtatcgacatgagagaacgctgcaagggcgctgttgctcgagatatcgaatgg
gaagcggaaatcggagatgctccatttggacaaccatctcctctgaccatcgatgcagat
gtattgttcgatccagatagtcccgacgtagctggagatggtctatggcagttgggtgtc
tttgcggctaaaatgcctgatggcaccggaccccgcagagatgaggtgacacaaaccctc
gacccttacaaccaagccttgcctctcgaagaaggtggtcctctgggattcggcagtatc
gacgtccctttccccatcgacgagctcggttgtgacgactacagatggctgtgtatcgaa
ttcaaaaggggtgaatcacccaaccctgattttggattcaccaccgagagcggggaagac
tccatcattagctgcaaagagcaaaagtgtcgaggcgttgaaattgatagcctcacatcc
tctccgactgatgtcctcacggacttgatgctacgcgaaggcaacgctgacaacccactg
acatacaactccgtcgctaccactaccgacgagtcaggtacagtgcgaggtgtggacctc
tggacactcagccagtggggtagcgagaacgccaacggagacggacctcaaaacaatttc
caggagtccgtcctatcggattactttgctgcccttccagtcatgatgtcaggagaaacc
ctcgatttcgtcccgctggtcacaaacttcgacatgaccgatctcaagtgtccccaggtc
aaatacatttgtaacgaggtcaaccgagatcaaggctcacaaccagagttccaatttacc
ggtgttccagacgaatctgtgttgagaagctgtttcgaggtgcccgatgatgcttgcaaa
ggtgttatcttcgacgatttggactgggacatgacccccatgggaccggtcacggctgat
gcacctgatgacgtcctcttcaacgtagaccttagcaccttacctgacagtggatcagcc
gatggtgatggactctggcgaatcggagtcttcggcgctcaaaatgtagatggagccgga
ccccgtcttggctacctccgtcagatcctggaccgtaatgaagcctccacccccgcagca
ggtgctggagaaccactggagctgaagaatctggccaccgaattcgatttgtctcagatc
ggatgtgactcggagtacaccttcctgtgtcttgagttctccaagggtatgcgtgccaac
cctgactttgagttcgaggtacaaggcggtggcgatgtcatcatcagttgtaaggagcaa
ccttgtcgtagacctgtcattgtcaccgacgtggaaacggatctacttggaaacggtcga
gttaacgagggaactcgcaacaaccgtatcctgtacgatatgactgccatcgccgatcct
tccagcggtaaggccgagggacgggacctctgggaaatgaccacttttggtagcacattc
ccagacggtcgaggccagcgattcaagcctgcgacagcgtacacgttcactcagtaccag
aaggatagaccagcttcccctggtgaggacatccgttacggagccgtggacaccaatttc
gacatgactggactgacttgcaaccagatcaggtacttctgttctgagctgcgcaagggt
gaatatgcctctcctgactaccagtttgtcgccaagcccgatgaggatgtgctcgtagac
tgcttcgaactcaactgtgaaggtgttgtgattgataacacacgtttgacgctgaatagc
gatgacgagcttgaagatggacccaacgaattgaacttcgacttccgagttgactccaat
cccaatggtggtgacgctgagggggataacctgtggcgtctggagaccttcacttccaac
agcggcgacggatcaggtcgtcgcgatatcctcaagcagcagaccttggatcctgctgac
gcgagcacagacctgggggccggcaacagcatggtgttccgcaacctgaacgccatggtg
gactcggccgacgtcaattgcgaggaggactactacctctgcgccgagattacgaagcac
gagagttccagccctgatttctcaatggaaggctcaagggaagattccactacaagttgt
aaattagttaagtgtaagaaagcagagccccctccagttcaagggcgacccggacctaag
ggtgctagaggcgaacccttcgagattccacctggtatggtaggaccccctggacgtgct
ggactacccggaacagttggataccgtggacgccgtggacccaatggacttggtggaccc
cctggatctcgtggagaggatggtcgcgacggtcgatctggaggacgtggacgccctgga
ccccctggaccccccggaccaactggtgaagttgccgccgctgcccaaacctcaaaggga
ccaagttggaacgcagctgccttcccatacatgcgtggagcaatggcagtgggactacct
ggatcggctggttatgctggtacccgtggaaaccgaggacctgctggtatgcgtggaccc
tctggacaatcaggaccttctggacctatcggttctgctggaccacgcggaccacgtggt
gaagacggtcctgatggagatgatggcaagaatggcgccctgggacaactcggattcccc
ggtgaacccggacgacctgggtctgctggatcccctgcaagaaatggagctcctggacac
aaaggatggaccggtatgttcggaaggaagggagcccgtggagataggggagaatctgga
agcgctggactcgaaggtgttggcggatccgtgggagcaattggaaacgctggagctcgt
ggactgcctggatcaactggacaaactggacaaaagggaattgtcggagaacgcggaagc
actggcgaagttggagataatggacgcattggtaacaccggacctatgggcgtttccgga
gcagtcgggttgagcggagccaagggacaagttggaagctctggagaacaaggaacaccc
ggtacagtcggtctgctgggcgagactggcaagcgtggcgctcatggaagtgccggagca
ccgggaacacccggagcaaacggcgatggtggctctatgggagaagttggtattgcagga
gacctgggtttgccaggacagaacggcgcacccggaacccagggcacaactggtattgaa
ggaatcgatggcgaacgtggaaacccaggattgatcggatttgttggtgtggatggtccc
cgtggagccgccggatctaggggccagcgtggaatagtcggagagcaaggacgtgttgga
agccagggagagtctggagaacaaggtttaactggaccaactggatctcgtggatctatg
ggagaacctggacctagtggagctccaggtctccttggagctggtggtctgaagggaact
ctgggagacaacggagaggcaggagccgctggaacccccggagaagcaggaactagggga
tcaccaggttcagccggaaccccaggatcgacaggagaaaatggccaccctggagaagac
ggtctagctggcagcgatggaaagactggtgcaactggctcacaaggcagggatggagct
tccggagcagcaggagagaggggagctactggcccaccaggacagcagggaccccctggt
ctgggtggagaatctggaatcagcggatctcgtggtgcccctggatcaccaggaacccgt
ggagaggctggcgaagaaggagaaccaggagcagccggacaggttggacttccaggatcc
caaggaaggcgtggagatgatggacctcaaggacccggcggtattgcaggactacaggga
caaacaggaatggatggtaacaccggagctcgtggatcccgtggagaccgcggacccatt
ggacaaactggaaccatgggagctactggcgaagttggagaacaaggtcttcgtggggct
gctggacttcagggtcccggtggtcttgtaggagagcgtggagttgatggacgtgctggg
cgacaaggagaagttggactcactggatcaggtggtatcggtggacctccaggactccgt
ggactacagggacctcctggactccgtggaggagttggacctaccggatcaatgggagag
gatggtgatccaggtgtttctggacagcaaggatcctctggaaggactggagagcgagga
agccaaggaccacctggacccaccggacctggtggaggacgaggacaaaatggagagagt
ggaggaccaggagagaacggacctgatggagctcagggaacacgcggtatcctcggagag
aagggatcaggaggacctcgcggaatccctggaaatcccggtccaggaggagctcccggt
gaacgtggatcagcaggtaacccaggagagaagggagaggccggaccatcaggtgttcaa
ggacgttcaggacgtgttggacaagctggtcagcccggagcccgtggatctcgtggagag
accggtcttgaaggatcagtcggacctctcggaagccccggtatgaacggacctacagga
gctcgtggtgaaatgggcccaactggaaactctggaaataatggaaagactggagatctt
ggacaacagggatctcgaggacctcagggtaaccccggattaatgggagagcgtggtatc
gaaggacttcagggaccaacaggagcttcaggagaatctggccgtcctggcaacatggga
ccccgtggacccgttggaaacagtggatccccaggaactctcggatcaggcggtcttggc
ggattgactggacccaccggacctgctggacccgctggacgacccggatccgagggagcc
ccaggaaaccctggaaatgacggacttcgtggagatgatggaggcaagggacctaatggc
gcccagggagctcgtggaatttctggaagcaacggccgtgatggaaaggatggcaaacct
ggaattcctggaatggagggatctaggggagatacaggagtaagaggatcggaaggtatc
gccggcatcgctggacctaggggagtacttggtgctctcggagcccagggagaacgcgga
caccgtggcaagattggaagccaaggatccgttggaagccacggagaagatggatctact
ggtccaatgggttcagtcggacctgctggtcctcgtggagagaccggttcatctggacct
tcgggacacaaaggacaaaatggtatgcccggagcacccggcgctggcggaaaagctgga
gaatctggaccacgtggagagcaaggctctgatggagttcgtggtcttccaggaaacaat
ggagccaacggaaagaacggaaaggaaggaccccgtggacccccaggactccgtggatca
tatggtactcgtggagagcgtggaacctatggaaccgaaggaccacccggaccacctgga
cctcccggacctcctggtgaagttcaaatgagcggatttgccttccagccacaacaatct
cagcaatcaaagggaccaagccagtactctcattactaccgtgacgagatccccaagacc
gttgaagaactggaccgcaccaagtttgagatgtacctcgccaagttcgaattccagatc
cagagcatgtacgcccccatcggcagcagggaaatgccagcacgcagctgcaaggacctc
ttcaaatgcttccccgatgcccttgatggtgattattggatcgattctaacgagggttcc
gtcaaggatgcctacctagctcagtgcgtaagggacggcgcagatggcaacccagagact
tgcatccacccaagatcagccactatttcccgtgctccatggtaccgtggtaactcagga
caccactacatcagccagatgaacggactcgagaagttctcttacgaagccagcgaggtc
cagatgaccttcctgcgtctgctgtccaacaaggcacaccagaacgtgacctaccactgt
aagaactctgtggctgtacgcgacaggcagactggatcaacagagcaggctctgagactc
atgacaacatcagatgtagaattatcacttgatgcaccaagccaggagcaatacgaagtt
attgaagacggatgccagctccgaacaggagaatggggccagacagttataaactattcc
accaggagaaatacccgtctcccaattgttgatgtcgctccttcagatattggaagagaa
gaccaagaatttggcatcactctgggacccgtctgtttctcataa
DBGET
integrated database retrieval system
