Strongylocentrotus purpuratus (purple sea urchin): 577839
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Entry
577839 CDS
T01019
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
spu
Strongylocentrotus purpuratus (purple sea urchin)
Pathway
spu03022
Basal transcription factors
spu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
577839
09124 Replication and repair
03420 Nucleotide excision repair
577839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spu03021
]
577839
03400 DNA repair and recombination proteins [BR:
spu03400
]
577839
Transcription machinery [BR:
spu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
577839
DNA repair and recombination proteins [BR:
spu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
577839
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
577839
NCBI-ProteinID:
XP_030853454
LinkDB
All DBs
Position
Unknown
AA seq
469 aa
AA seq
DB search
MATSSEDAFDNSRKLDCKDLHGYLRTLQGSVLDRLYNHPATCLAVFRELPVLGKHCIMRV
LFIDTPIPQAAVTSWIQSNQQEQLHAALKTLTDLRLFRDQSLPGGLPGWLLNLTFRTNLK
TALIGGGKPWAISGKGGKGGKDKKVKETATLDKYSSERWECVLHFLVGSSKAVDTLSRDI
ATVLTHSGLMRLGESGGTPVITPSGFQFLLLDTPSQVWFFMLQYLETSQARGLDIVDALS
FLFQLSFSTLGKDYSSEGMTEQQLHFLQHLRELGLVFQRKRKSMRYYPTRLAINLASGVS
SMAKDDHKDGFIVVETNFRIYAYTESDLQVEILGLFCSMMYRFPNLSVAALTRESVQLAI
SNGITAEQILSFLRTHAHPNMRLKTPIVPPTISDQVRLWELERDRLSFTQGIIYNEFLSL
HDFEVLRDYAKDLGVLIWDSTARRIMIVSPAGHDSVKKYWKRLKKGQVS
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atggcgacttccagtgaagatgcatttgataattcaaggaaacttgactgcaaagatctc
catggttatctacggacccttcaaggatctgtcttagatagactttacaatcatcctgca
acatgtctggctgtttttcgtgaacttccagttttgggcaaacattgcatcatgagggtg
ttgttcattgacactcccattccccaagctgcagtcacctcatggatacagagcaaccag
caggaacagcttcatgcagcactgaaaacattgacagatcttcgtctgttcagggaccag
tctttgcccggcggccttccaggatggcttctcaatctcaccttcaggactaatctcaag
actgctcttattggaggaggcaagccatgggccatcagtggaaaaggtggaaaaggtgga
aaggacaagaaagtgaaagaaacagctactcttgacaagtactcttcggaaagatgggag
tgtgtacttcatttcttggtgggctcctccaaggctgtagatacgttgagtcgagatatc
gctaccgtcttgactcattcaggtttaatgagattaggtgaatcaggaggaacgccggtg
atcacaccctctggttttcagttcctgctcctagataccccctctcaggtctggttcttc
atgctgcagtatctagagacctcccaggctcgaggtctagacattgtagatgctctctcc
ttcctcttccaactcagcttctcaacgttaggaaaagactattcatcagagggcatgact
gagcagcagcttcatttcttgcagcatctgagagagctaggcttggtgttccaaagaaag
aggaagtccatgcgctactatccaaccaggctagccatcaacttagcttcaggtgtatca
agtatggccaaggacgatcacaaagacggcttcatcgtcgtggaaaccaacttccgtatt
tatgcctacacagagtcggatctgcaggttgaaatactgggactcttttgctctatgatg
tacaggtttccaaacctttctgtggctgctctgacaagggaaagtgtacagttagccata
tcgaatggaatcacagctgaacagattctaagttttttgagaactcatgcacaccctaac
atgagactgaagacacctatcgtacctcctactatcagtgatcaggtcagactctgggag
ctggagagagacagactcagttttacacagggtatcatatacaatgagttcttgtctctt
catgactttgaggtgctacgggactatgctaaggatcttggtgtacttatctgggatagt
actgcacgacgcatcatgatcgtttctccggcagggcatgatagtgtcaagaagtactgg
aagcgactgaagaaaggacaagtttcgtaa
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