Strongylocentrotus purpuratus (purple sea urchin): 581723
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Entry
581723 CDS
T01019
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
spu
Strongylocentrotus purpuratus (purple sea urchin)
Pathway
spu03013
Nucleocytoplasmic transport
spu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
581723
03015 mRNA surveillance pathway
581723
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spu03019
]
581723
Enzymes [BR:
spu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
581723
5.6.2.5 RNA 5'-3' helicase
581723
Messenger RNA biogenesis [BR:
spu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
581723
mRNA cycle factors
Common to processing body (P body) and stress granule
581723
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
AAA_16
UvrD-helicase
DEAD
Helicase_RecD
nSTAND3
ATPase
SRP54
AAA_22
AAA
PhoH
ArsA_ATPase
Motif
Other DBs
NCBI-GeneID:
581723
NCBI-ProteinID:
XP_011670236
UniProt:
A0A7M7HJG8
LinkDB
All DBs
Position
Unknown
AA seq
1157 aa
AA seq
DB search
MSSSVDAYGPSSQSLLTFLDAEEHDLLGADTQGTDFDYNVGDFTLPSQTQASQSQASQLD
LASQSQSQVDASQTNGIDEAVAAVEQQVKELTFEEDEEDATVLSKDLPNHACKYCGIHDP
AAVVLCNGTKKWFCNGRGNTSGSHIINHLVRAKCKEVTLHKDSPLGETVLECYNCGCRNV
FLLGFIPAKADSVVVLLCRQPCATQSNLKDMNWDPSQWQPLIQDRCFLKWLVKIPTEQEQ
LRARQISASQLNRLEELWKENPEATLEDLEKPGVDEEPASVMLRYEDAYMYQNIFGPLVK
MEADYDRKLKETQTQEGVTVRWDIGLNRKTRATFNFPKKEDLKLMHGDELRVRYTDPREP
WSGLAHVVKTPDNYSDEICVELKSGSNIPVKFTTNFAVDFVWKSTSFDRMQNALKTLAVD
DTAVSSYLYHRLLGHDVENLVLKCNLPKRFSAQGLPELNHSQVSAVRTVLTRPLSLIQGP
PGTGKTVTSASIVYHLAKQGTGQVLVCAPSNIAVDQLTEKIHKTGLKVVRLCAKSREAID
SPVSFLSLHNQVRNMEGAEEMQKLQALKDEMGELSSNDEKRYRTLKRNCERELLQNADVI
CCTCVGAGDPRFARFRFRAVLIDESTQSTEPECLIPAVLGSRQLVLVGDHCQLGPVVMCK
KAANAGLCQSLFERLVVLGIRPIRLQVQYRMHPSLSAFPSNIFYEGSLQNGVTAAERINR
AVDFPFPQPDKPMFFYATTGQEEIASSGTSYLNRTEASNVEKLTTRFLRAGVKPEQIGII
TPYEGQRAFIVQYMQYSGPLNVKLYQEVEIASVDAFQGREKDYIILSCVRANDHQGIGFL
NDPRRLNVALTRGRYGVIIVGNPKVLSRHPLWNHLLSYYKEQKVLVEGPLNNLKESLIQF
SKPRKLINPSNPGGRYMSMAMFDAREALAPGGVFDRSRMSNGGPSHFPANPGRVHDQMGY
IQPNQSRIAAANFPIPVNMFMPPPIPGAPGFFNQPPPPNARGMGPNRGPNFSGSPGGGGG
GRKRGRGYQGSQHPRQQHNNAASNGHGKPGGTSGSQNMSQYNLSLNSTQNSQPDVSQSFS
QGVLTQGNMSMSQPMSQPGLSQPGFSQMGLSQPGLSQPELSQESFMGESEFKSQLDAALS
QDSTYQGDRNYMQGFGY
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgagctcgagcgtggatgcctacggacccagctcgcagagcttgctcacgtttttggat
gcggaagaacatgatctgctgggcgctgatacgcagggcacagactttgactacaatgta
ggggattttacattgccttcacagacacaagcttctcaaagccaggcatctcagctggat
ttggcttcacagtctcagagtcaggtggacgctagccaaaccaatgggatagatgaagct
gtagctgctgtagaacagcaagtcaaggaattgacttttgaggaagatgaagaagatgca
acggtgctctccaaggatttgcctaaccatgcctgcaagtattgtggcattcatgaccca
gctgcagttgttctttgcaatggtaccaagaagtggttctgcaatggacgaggaaacacc
tctggcagccacatcattaaccaccttgtgagagccaaatgcaaggaggtgacccttcac
aaggacagccccctgggagagactgtcctggaatgctacaactgcggatgtcgcaacgtc
ttcttgctaggcttcatcccagccaaggctgactctgtggtcgttctgctttgtcgccag
ccttgcgccacacagagcaacctgaaggacatgaactgggatccgagccagtggcagcct
ctgatccaggaccgctgcttcctcaagtggctcgtaaagatccctaccgagcaggagcag
ctgagagcccgtcagatctccgcctctcagctcaaccgactggaggagctctggaaggag
aacccagaggccactctggaggacctggagaaaccaggagtagacgaggagccggcctct
gtcatgctcaggtatgaggatgcatacatgtatcagaacatctttggacctctagtcaaa
atggaagctgactatgacaggaagctgaaggagacccagacccaggaaggggtcactgtc
cgttgggatattggtctcaatcgcaagaccagggccacctttaacttccccaagaaagaa
gatttgaagctgatgcacggtgatgagctgagggtccgctacaccgatccacgagagcct
tggtctggtttagcccatgttgttaagactccagacaactacagtgatgagatctgtgtg
gaattgaagagcggcagcaacatccctgtcaagttcaccaccaactttgctgttgacttt
gtctggaaatcaacatcttttgacagaatgcaaaatgctctgaagaccctagcagtggat
gacacggcagtgtctagctacctctatcatcgtctcttggggcatgacgttgagaaccta
gtcctcaagtgcaacctgcccaagaggttctcggcccagggtctaccggagctcaatcat
tcccaggtgtcggctgtacgcactgtgttgactcgccctctaagtctcatccaggggcca
ccaggtactggcaagacggtcacctctgcttctatcgtgtatcatctggccaagcaagga
actgggcaagtgctggtgtgtgcacctagtaacattgctgtggaccaactgactgagaag
atccataagactggtctcaaggtggtcaggctgtgcgctaagagcagggaggccatcgac
tcaccggtctctttcctgtccctgcataaccaggtgcgtaacatggagggtgcagaagag
atgcagaagctccaagccctgaaggacgagatgggagaactgtccagcaatgacgagaag
aggtaccgcactctcaagagaaactgtgagcgagagctgctacagaatgccgatgtgatc
tgctgtacctgtgttggagcgggtgacccacgctttgcacgcttcaggttccgtgctgtg
ttgattgatgagagtacccagtccaccgagcctgagtgtctcatcccagctgtgcttgga
tctagacagcttgttctagttggtgaccattgccagcttggtcccgtcgtcatgtgcaag
aaggcagctaacgcaggcctgtgccaatctctctttgagcgtctggtcgtgcttggcatc
cgaccaatcaggctgcaggtgcagtatcgtatgcacccctccctcagcgcgttcccgtcg
aacatcttctatgagggctccctacagaatggggtcacggcagctgagaggataaaccgt
gcagtggatttcccattccctcaacctgacaagccaatgttcttctacgctaccactggc
caggaagagattgctagctctggtacatcctatctcaacaggactgaagcctccaacgtt
gagaagctgactacccgtttcctgcgtgctggagtcaagccagagcagattggcatcatc
acgccctacgagggccagcgtgcgttcatcgtccagtacatgcagtacagcggccccctc
aacgtcaagctctaccaggaggtggagattgccagcgtggatgccttccaaggacgtgag
aaggattacatcatcctgtcctgcgtcagggctaatgatcatcaaggcatcggtttcctt
aacgatcccagacgtctcaatgtcgccctcactagaggaaggtatggagtgatcatcgtt
ggtaaccccaaggtgctgtctcgtcaccctctatggaaccatctcctgtcatactacaag
gaacagaaggtcctggtcgaaggtccgctaaacaacctcaaggagagtttgatccagttc
agcaaacctcgcaagctcatcaacccatctaacccgggaggtcgttacatgagtatggcc
atgtttgatgccagggaggccctagctcctggtggtgtctttgatagatccaggatgtcc
aatggaggtccatctcacttcccagccaaccctggacgtgtccatgaccagatggggtac
atccaaccaaaccagtcccgcatcgctgcggccaacttccccatccctgtcaacatgttc
atgcccccgcccatcccaggtgcccccggcttcttcaaccagccccctccaccaaacgcc
cgtggcatgggtcccaacaggggccccaatttctctggcagcccgggaggaggaggaggt
ggtcgtaagagggggcgtggttaccaaggctcacagcatcctcgtcagcagcataataac
gcagctagcaatggacatggcaaacctggtggtaccagtggcagtcagaacatgtcacag
tacaacctctctctcaacagcacccagaacagtcagcctgacgtatcacagtccttctca
cagggtgtgttgacccagggtaacatgtccatgtctcagcctatgagccagccgggactc
tctcaaccaggcttctctcaaatgggtctgtcccaaccgggactatcccagcctgagctc
tcgcaggaaagctttatgggcgagtctgagttcaagtctcagctagatgccgccctctcc
caggactccacataccagggagaccgcaactacatgcagggtttcggctattag
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