Strongylocentrotus purpuratus (purple sea urchin): 582203
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Entry
582203 CDS
T01019
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
spu
Strongylocentrotus purpuratus (purple sea urchin)
Pathway
spu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
spu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
582203
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spu03400
]
582203
Enzymes [BR:
spu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
582203
DNA repair and recombination proteins [BR:
spu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
582203
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
DNA_ligase_IV
RNA_ligase
mRNA_cap_enzyme
LIG3_BRCT
PTCB-BRCT
PNKP_ligase
Motif
Other DBs
NCBI-GeneID:
582203
NCBI-ProteinID:
XP_011668210
LinkDB
All DBs
Position
Unknown
AA seq
930 aa
AA seq
DB search
MASADQQPTSCTSTGASTEPEGPTVASQIPFVQLCGFLERVQKKKGSDAKKLLFKEFLEK
WREFHKAMHAKNPNTTDNFYPAMRLLLPQLERERMAYGIKEHTLAKFYIDIFGLAKESTD
AKKLLNYRAPTAKQEAGDFASVAFFVLRNRCPERGSLTIKDVNDSLDSIALNNATKKKDL
VKQSLLNLLRKTSAIEQKWFIRMIMKEMKVGLSQQSILGTFHPDAEDLFNVTNSLSKVCS
DLSSPSVRLNEIAISVFSPFSPMLGERAKITGVERMMEHKGFLIETKLDGERMQLHKEGD
KYMYFSRRSHDYSGSFGKSPMEGSLTPYIANCFNRDVHSCILDGEMCAYNSETKAFISKG
ENFDIKSLRDEEDVQVCYAVFDVLLVNNTKLANRPLKERLNYLPKVFTVIEGRMVLVERR
DASTKAEVVEALNEAIDKREEGIVVKHPESTYRPDKRKGSGWLKIKPEYVDNLMDELDLL
IVGGYFGKGYRSQLISHFLCALAVPPSREGDHPKIFYSFCKVGSGYTLQELLDFNQKLAK
HWKKYDKENPPRWLQCTREKPELYVEPQHSFIVQVKATEINSSNVYRTGCTLRFPRLEKV
RDDKDWHQCMTTEEMENMRQQAEGKLTGRHVNVDDDEIVTTKRRKATSRAVIPVAVPSRF
RAADTSNVKQTSEMLEGRELCIMNSPASHPKDQLEKKIVECGGLVVQNPGIDTYCVLADK
VNLKVKNIFSAKIYDVVKTSWLIESLDAGRLLPWLPSHMLFTSAKMTAQFALDYDCHGDS
YTQDVNEEKLREVFANVEKKKSKQPMTAEQIAEIEMDYFPQDSLLGLFRLCRVYMDSCLV
IGEEDTHIKDCSLDLVSLEMRFHGATMCPMLDRQVTHIIVDKSDLSRVREFRLRGQKRAL
KQHVVTSEWVRDCIQKEKFLSERPYEAAMS
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atggctagtgccgaccagcaacccacttcatgcacttctacaggagctagcacagagcca
gaggggccaaccgttgcaagccagatcccttttgtacagctttgtgggttcctagagaga
gtccagaagaagaaggggagcgatgcaaagaaactactcttcaaggaattcttagaaaaa
tggagagaattccacaaagcgatgcatgccaagaacccaaacacgacagataatttctat
ccagcaatgcgactactgttaccccaacttgagagagagagaatggcttatggcatcaaa
gagcacaccctagctaaattctatattgacatctttggtttagccaaagaaagcacggat
gccaagaaacttctaaactacagggctccaacagctaaacaggaagctggagactttgct
agtgttgctttctttgtcctgcgtaatagatgcccagagagaggaagcttgaccattaag
gatgtgaatgacagtcttgactctatcgctctcaacaatgctaccaagaagaaagacctg
gtcaagcaaagtttgttgaacttactcaggaaaaccagcgctatagaacaaaagtggttc
atacgtatgattatgaaggaaatgaaagttggtctcagtcagcagtccattcttggaacc
ttccatcctgatgcagaagacttgttcaatgttaccaacagtctctcaaaggtttgcagt
gatctgtctagcccgagtgtgagattgaatgagattgccatcagtgtgttcagtcctttc
agtcctatgctgggtgaaagagccaaaattactggggttgagcgtatgatggagcacaaa
ggtttcctgattgaaaccaaactagatggagagagaatgcagcttcataaagaaggagac
aagtacatgtatttctcaagaaggtcacatgactattctggatcctttggcaagagccca
atggaagggagcttgacaccatacattgcaaactgcttcaatagagatgttcattcctgc
atattggatggtgagatgtgtgcctataattcagagaccaaagctttcatctcaaaggga
gaaaactttgacatcaaaagcctgcgagatgaagaagatgttcaggtgtgttatgctgtg
tttgatgtactccttgtgaacaataccaaacttgcaaaccgccccctcaaggagagactc
aactacttaccaaaagtgttcactgtaattgaaggaagaatggtcttggtggagaggaga
gatgcatctacaaaggcagaggttgtagaggcattgaatgaggctatagataaaagagaa
gaaggaatcgtcgttaagcatccagagtcaacttatcgacctgacaagagaaaaggtagt
ggttggttgaagatcaaacccgagtatgtcgacaatctgatggatgagttggaccttctt
atagtcggaggctactttggcaaagggtatcggtcgcagctcatctcacatttcctctgc
gcactagctgttcctccaagcagggaaggagaccatcccaagatcttttactccttttgt
aaggtcggatcgggatacactttacaggagctcctagatttcaaccagaaacttgccaaa
cactggaagaagtatgacaaagagaacccacctagatggttacagtgcacaagggagaaa
ccagagctctatgtggagccccagcattccttcatagttcaagtcaaagctaccgaaatc
aactcatctaatgtgtacaggacaggatgtacactacgattccctcgtctggagaaggtt
agagacgataaggactggcaccagtgtatgaccacagaagagatggagaacatgagacag
caagcagagggcaagttaacaggaagacacgttaacgtggatgacgatgagatcgtgact
actaagagaagaaaagcaacatcaagagcagtaattccggttgctgtgccatcaaggttc
agagctgcagacacttctaatgtcaaacagacgtctgaaatgctggagggacgagagctc
tgtatcatgaacagtcctgcaagccatcctaaggatcagctagagaagaagatagtagag
tgtggaggcttagtggttcagaacccaggtatagatacatactgtgtgctggcggacaag
gttaacctcaaggtcaagaacatattcagtgccaagatatatgacgttgtgaagacttca
tggctcattgaaagcctggatgccggtcgcttattgccatggttaccatcccatatgctg
ttcacctctgctaagatgacggctcagtttgccttggactatgactgtcatggagacagc
tatacacaggacgtcaatgaagagaaactcagggaggtctttgcaaatgtggagaagaag
aagagtaagcagccaatgactgctgaacagatagccgagatagagatggactactttcct
caagactccctccttggtctctttcgtctgtgccgtgtctatatggattcatgccttgtc
attggggaggaggacacacacatcaaagattgctctcttgacctggtatccttggagatg
aggtttcatggcgccaccatgtgtcctatgctagacaggcaggtcactcacatcatcgta
gacaaaagtgaccttagcagagtgagagagttccgtctacgaggccagaagcgagccttg
aagcagcacgtagtcacctcagaatgggtcagggattgcatccagaaagagaaatttctc
agtgaaaggccctatgaagcagcaatgtcttga
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