Strongylocentrotus purpuratus (purple sea urchin): 582414
Help
Entry
582414 CDS
T01019
Name
(RefSeq) serine/arginine repetitive matrix protein 2
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
spu
Strongylocentrotus purpuratus (purple sea urchin)
Pathway
spu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
582414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spu03021
]
582414
03019 Messenger RNA biogenesis [BR:
spu03019
]
582414
Transcription machinery [BR:
spu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
582414
Messenger RNA biogenesis [BR:
spu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
582414
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Pcf11_helical
VHS
Motif
Other DBs
NCBI-GeneID:
582414
NCBI-ProteinID:
XP_030836411
LinkDB
All DBs
Position
Unknown
AA seq
2496 aa
AA seq
DB search
MEENLEMVRREYGSTLSDLKINSKPHINTLTTLAEEYVPYASEVVRLIENRLQKAPYAEK
LPAMYLMDSIVKNVKKGPYQQLFAKNLTNNFCGVFSKVNEKTRASLFKLRSTWNQYFASG
ILHALDVRVQKIDPAWPIMAASSSSSSSAPAAPALSSIHINPKFIKKPAPMESTAAPTPV
QSTPTVVTSELSDKDRQEQDMRQSLISKRQELFQIQQQRLKLELEQTKARLELQARELAA
KTQALADQEKQISQLANKSQAPNEPISVLPTTSVPGPATKPAGASSTAGLGLLGEAPIQN
FPPAPGPGGLLGFAPGTHAPPGMRSTPPLASQAPATAANLSNVSASGPVQSQASRNTINP
RDPRLARDPRLRQAFEQQQQRQQQEQLLLLQQKKQRLHQQEQLEQQQQQQAVANIANQPL
TGLPTSLRLDASAAAPQWTGGVPPSTAPAIGTKPPVSAAASTAVSAAPSASTKDSSTSGP
SDNPKKVSKASSPGKKSSGKGKTGTKPGVKLDHLDLSGRIKSKEDSKTERSGKQNEVKKG
KSEGDRAAERDASKRSLRPSSRNYRKTAKDDKEEKMRSDSRTSRPASASGSPSQSDSHSR
SRSRSRSPRSGPSSPRPSERRERERRGGKSSDSKRKDSKENKPEIKEKRKSPSPDRATDE
EKSVSKKYSKQDQLPPKKRARLIEKEQQEAERERERERNSRAVRSRSDRERAAGWTRSET
RDYSASQRPPRRPSLLDPNIKIPKELSLSKLAKVLEQAEKQLHSGALTHQQHQQLLRELN
EIYNIQQQKREEEERYNRHQQPPPPEWGPRDPRDPRDPRMMRDPRAQRDSMPYNGPHGLR
DPRDAFDPRGPPDIHAGPPYADARPPHHRREFIDRDPRAMQDPKGPAQEDPRHRSLLEDP
RMRKFASNPDVDEGGRKLPLLQDPGAMPDPRPRIMKPQSEDDLIQGNINPGMDVDERKRT
FRQYRGPLDEKLPLPVTPKDTDERDFKKQFAEMGDTDLRKLPPGSDGQSKMDVDYRVLPA
AFQGNVKENIEGIIDTDERQRVKAGDSDVRKIPDDSAKDKPSEESSKPKEEGEKQTAQDS
ASSGKIKKETKSVNKMPTRSSAKAEWEAAAVGGNLDEDVDMRPKSDIKKVKKNDGNDEIS
KPVQTSTPSGSAKDDINDKDDRKKMDESSKAMKETSSSDTDERKFLAKSEVTEINKVDDK
VDDMDLPADDVDLRQPMPRLEEEIRPLMDFGPDPNILYHEREEMMDNDYRQGPFMGPGHP
HFRRGPDGDPNKWQTWKKEHPDEASAPHFDDGPGGFDPNDPRHPAHFRQRMDPRGPFEGD
MAPMDSHQQRFRESPPMEMDDGQSMEAWRRRTRGDIPDKHFHFREGDCPPPLERQDFRMD
DRPPMEEGDFPPDRDARDPGIIRNGPVRLSRDQESFEFPPDITPADTPQSPDSENRLPPM
YCFGPDTIQKQEQKPSRDDRDPHPPFPQERLPFQRGDGPAFRGPRPEEIMPRGPEGFNPR
DSPPFRGPRPDGRDRHAHMGPDGPRFMSGPRGLPDMPRFPGPGGPRKMGPGIRPDGPVHG
PNQFQHRPNSPPVSSDMQRPPRNGPASNLPGNILSNFGNLQQIVQILRKQVTNQQQPEQN
QNPIPAHNLIRSALQTMGVTGNIPSHVMQAAQNNLLEQMRSMPNMNMNMLRMMRPQRPNN
PNQRMERPPMPQGPGPRQQLRGPPPGMQPRPPFSSGGLPPNSMASEMQKGFPQGMGPPPN
SNQSGLPNQGMPQQGIPPQGMPPQGMPPQGMPQQGIPPQGIPPQGMPPQGMPPHGMPPQG
MPQQGMPRGIMPQGMLPQGMPPQGMPPQGMPPQGMPPQGMHPGMMPGTQGGPSGPGFLLQ
GVPGLGMSKPPRPAAPASGLPSQLDITSLFSKLVSSGILKEPLKPASPLPDQTSAPATAP
AQKAKEGGEAEGEKEEDDSQEVEDDGSFDIPPMALVNEELKVRHPGIIKRIYSGMQCTSC
GMRFVIAQMDRYRKHLDWHFRQNRKKQDGIKATTSRKWYYEVDEWLDYEEINDMEDARST
FFEEQAQEFADKDRGDSSVPVTSDPSDEICKICRENFEQFFNEETEEWHFRNSIRVDGKT
FHPSCYDDAKDTSGFLETPTDDLLSPPLVRTRNSFSGTAVSPGASPASLKPSFIAPGKES
WDAVMSTDSKPASTVGVTIKTEPKTEANPVPEGNASEDTSKASDLVKVKVEPEEPMESKP
STEEASSSIGTEIKIEPSLNTIKSEPVVGEVQTTLLVKQESGVDSAVSKTLVEKEQFRQE
EMKSSLDVLRAKSSPVPFLEEVSLEDMETDAPALDTMPAETVDSPSAQIPGEVASTKEFT
EDAKTIPSVLSENPLPTDVEEQAATETGATTVAPSGSGDAAIALDPPVESPADNGHISKN
LPLSEAVATLGESEDSAEPPVLEVEAPLSSASQDQTGNAARFSSPGIFEKLTPPPALTSM
ESEESKPNVVEEPPAESCTGGGDANQNAMETQESST
NT seq
7491 nt
NT seq
+upstream
nt +downstream
nt
atggaggaaaatctggagatggttcgccgggaatatgggtctacgttgtccgacttgaaa
atcaacagcaagccgcacatcaacacgctcacaacgcttgcagaggaatacgtaccatat
gcgtcggaggtcgtgcgactcatcgaaaatcgactgcagaaggccccttatgccgagaag
ttacctgcaatgtacctgatggattccatagtcaagaatgtgaagaaaggcccttaccaa
caactatttgccaagaatcttaccaacaacttttgtggggtgttttcgaaggtaaacgag
aagaccagagcatctctcttcaagttacgatcaacatggaaccagtactttgcaagtggg
atcctccacgcccttgatgtccgtgttcagaagattgaccccgcctggccaatcatggcc
gcctcttcttcttcatcttcttctgctccagctgccccagctctttcttccatccacatc
aacccaaaattcatcaaaaagcctgcacccatggaatctacggcagcccctactcctgtg
cagtctacacccactgtggtgacgagtgaactgtctgataaggatcgtcaagagcaggac
atgaggcagagcttgatctccaagcggcaagagctctttcagatccagcagcagcgtcta
aagctggagctggagcagaccaaggcacgattggagttgcaagctagagagctggcagca
aaaacccaagctcttgcagatcaagagaagcaaatctcccaattggctaacaagagccaa
gctccaaatgaaccaattagtgttctaccaaccacatctgttcccggcccagctaccaag
ccggcaggagcttcatcaactgcaggcttgggccttttgggcgaggctccaattcagaac
tttcccccagctccagggcctgggggcctcttgggcttcgcaccaggtactcatgctcct
cctggaatgcgttcaactccccctctggcttctcaagctccagctactgctgcaaacctt
tctaatgtgtcagcatctggtccagttcaatcacaagcatcacggaacaccattaaccca
cgtgatccgagactagctagggatccaagacttcgtcaggcctttgagcaacaacagcag
aggcaacaacaggagcaactacttcttctccagcagaagaaacaacgtctacatcagcaa
gaacaacttgagcagcagcagcagcaacaagcagtagccaacatagctaaccaacctttg
actggtttaccaactagcttaagacttgatgcatcagcagctgctccccaatggactggt
ggtgtacctcccagcactgcccctgccattggaaccaaaccacctgtatcggccgcagca
agtactgctgtgtctgcagcaccttctgcatctacaaaggattcatctacttctggccct
tcagataatcccaaaaaggtctccaaggccagtagtcccggcaagaaatcttctggaaaa
gggaagactggaacaaagccaggggttaaacttgaccatttagatctctctgggaggatt
aaatcaaaagaggatagtaagacagaaagaagtggcaagcagaatgaagtgaagaaagga
aagtcagagggagatagggctgcagaaagggatgcttctaaaagaagcctgaggccgtca
tctaggaactatcgtaaaacggccaaggatgacaaggaggaaaagatgagatcagattcc
cgcacatctcgcccggcgtctgcttcaggttcaccttcccaatctgactcgcactcgagg
tcacggtccaggtctcggtctcctcgctctgggcccagctccccccggcccagtgaaaga
agggagcgagaaaggagaggtgggaagtcttcagacagcaagagaaaagatagcaaggag
aataagcctgaaatcaaggagaaaagaaaatccccatctccagacagagcaacagatgaa
gagaaatcagtatctaagaagtacagcaagcaggatcaactaccaccaaagaagagggcc
aggctgattgaaaaggagcagcaagaagctgaaagagaaagggaaagagagagaaatagt
cgggcagtcagaagtcgaagtgaccgtgaacgagcagctggctggacgcggagtgagacc
agggattattctgcaagtcaacgaccacctaggagacctagtttgttggatcccaacatt
aaaattccaaaggagctttcattgagcaagctggcaaaggtgttggaacaggctgagaag
cagctccactcgggagccttgacccaccaacagcatcaacagctacttcgggagctgaat
gagatctataacattcagcaacagaaacgggaagaagaagagcggtataacagacaccaa
caaccaccaccaccagagtggggacctcgtgatccacgagatcctcgagaccctcgaatg
atgcgagacccaagagctcagagagattcaatgccatacaatggtccacatggtctcagg
gatccgagggacgcattcgatcccagaggtccaccagatattcatgctggtcctccttat
gcagatgccagaccaccacatcaccgcagggaattcattgatagagatccaagggctatg
caggatccaaagggtcctgcccaagaagatcctagacatcgatctttactcgaagatcct
aggatgaggaaatttgcatcaaatcctgatgtagatgaaggtggcaggaagttgccattg
ttgcaagatcctggagcgatgcctgatcccagaccaagaatcatgaaaccacaatcagag
gatgaccttattcagggcaatattaatcctggaatggatgtagatgagagaaaacgtacc
ttcagacagtatagaggtcctcttgatgagaaacttcccctacctgttactcctaaggat
acagatgaaagagactttaaaaaacaatttgctgagatgggtgacacagatctacgcaaa
ctgccccctggttctgatggacagagcaaaatggatgttgattaccgagtactacctgct
gctttccagggtaatgttaaagagaacattgaaggtatcatagacacagacgaaagacag
agggtgaaggctggagacagcgatgtgaggaaaatccctgatgactctgcaaaagacaaa
ccgtcagaagagtcgagcaagccaaaggaggaaggagaaaagcagacagctcaagacagc
gcttcttcaggaaagattaaaaaagaaactaagtctgtaaacaaaatgccaactagatca
tcagcaaaagctgaatgggaggctgctgccgtagggggaaatctggacgaagatgtagat
atgaggcctaagtctgatatcaagaaagtaaaaaaaaatgatggtaatgatgagatatcc
aaaccagtacaaacttctacaccaagtggatcagcaaaagatgatatcaatgataaagat
gacagaaaaaaaatggatgaatctagcaaggctatgaaagaaacaagcagcagtgacact
gatgagaggaaattccttgcaaagtcagaagtgacggagattaataaggtcgatgataaa
gttgacgatatggacttgcccgcggatgatgtagatttgcgtcaaccaatgcccaggctg
gaagaagagataaggcctttaatggactttggacctgatccgaatatcctgtatcatgag
agggaagagatgatggataatgattataggcaagggccatttatgggcccaggtcatccc
catttcagacgtggccctgatggcgatccaaacaagtggcaaacatggaaaaaggagcat
ccagacgaagcctccgctcctcatttcgatgatggccctggaggctttgatcctaacgac
ccaaggcatcctgcacattttagacaaagaatggatccaaggggtccgtttgaaggtgac
atggctcctatggattcgcaccagcagagattcagagagtctccccctatggagatggat
gacggacaatcgatggaagcctggcgccgcaggactagaggtgacattccagacaaacat
ttccatttcagagaaggggattgtcctcctccattggaacgacaagacttcagaatggat
gacagacctcctatggaggaaggggacttcccaccagatagggatgctagagatccaggg
ataatcagaaatggaccagtccgcctgtcaagggaccaagagagttttgagtttcctcct
gacatcactcctgcagatacgcctcagtctcctgattctgagaatcgtttgccacctatg
tattgctttggccctgatacgatacagaagcaagaacaaaaaccatctcgtgatgatagg
gatcctcatcctccattccctcaagagagactgccattccagcgaggagatggccctgca
tttagaggaccaagacctgaagaaataatgccacgtggtccagagggcttcaacccaaga
gacagtccacccttcagaggaccaagaccagatggtagagataggcatgcccacatggga
ccagatgggccaagatttatgtctgggccaaggggactgcctgacatgcccagatttcct
ggaccaggtggacctcggaaaatgggacctggaattcgtccagatggtccagtgcacggg
ccaaatcagtttcagcacagacccaatagtccacctgtatcttctgatatgcagaggcca
ccaaggaatggacctgccagtaatcttccaggcaatattttgtcaaactttggcaatctg
cagcagattgtgcagattctgagaaagcaggtgacgaaccaacagcagccagaacagaac
cagaacccgattccagctcacaatctcattcgctctgccttacagaccatgggagtgaca
ggcaatatacctagccatgttatgcaagctgctcagaataatctgcttgagcagatgcga
tcgatgccaaacatgaacatgaatatgttgaggatgatgagacctcaaaggccaaataac
cctaaccaacgtatggagagaccacctatgccacaaggtcctggacctaggcaacagctg
cgtggaccccctcccggaatgcagcctcgtccccctttttcatctggtgggctcccacca
aacagtatggcttcagaaatgcaaaaaggctttcctcaaggaatgggaccacctccaaac
tcgaatcagtcagggcttcccaaccaagggatgcctcaacaaggaattcctccacagggg
atgcctccacaagggatgcccccacaaggaatgcctcaacagggaattcccccacaggga
attcccccacagggaatgcccccacagggaatgcccccacatggaatgcctccacaggga
atgcctcaacagggaatgccacgaggaataatgccgcaaggcatgctgccacaaggtatg
cctccacaaggtatgcctccacaaggcatgcctccacagggaatgcctccacaaggtatg
catcctgggatgatgccaggtacgcaaggaggaccaagtggcccaggatttttactgcaa
ggagtgccaggtcttggaatgtcaaaaccaccccgtcctgcagctcctgcatcggggttg
ccctcccagctggacattacctcactgttctccaagctggtttcctcagggatcttgaag
gagcctctcaaaccagcctccccccttcctgaccagacctctgcccctgcaactgcccct
gcacagaaggccaaggaggggggcgaggcagagggtgagaaggaagaagacgattcccag
gaggtggaggatgatggttcctttgacatcccgccgatggctctcgtaaatgaggagctc
aaagtacggcatccaggaatcatcaagcgtatctacagcgggatgcagtgcacttcatgc
ggcatgcgctttgtgattgcccagatggaccgataccgcaagcatctggactggcacttc
cgacagaaccgcaagaagcaggacggcatcaaggcaactacctcaaggaagtggtactat
gaggtggacgagtggctggactatgaagagattaatgacatggaagatgcccgaagtacc
ttttttgaagagcaggctcaggagtttgcagataaagatcgaggtgattccagtgtgcca
gttacaagcgaccccagtgatgagatctgtaagatatgcagagagaactttgagcagttc
ttcaacgaggagacagaggagtggcatttccgtaactcaatcagagtggatggaaagact
tttcatccatcttgctacgatgatgctaaagatacatccgggttccttgagacacccact
gacgacctgctgagccccccacttgtacggaccagaaactccttcagcggcacagcagtt
agtcccggtgctagccctgcttccttaaagccttcattcatcgctccaggaaaggagagc
tgggatgctgtcatgagtacagatagcaaaccagcatctactgttggtgttaccatcaaa
actgaaccaaagacagaagcaaatcctgttccggaaggcaatgcaagtgaggatacgtca
aaggcttccgacttggtgaaggtgaaggtggagccagaagagcccatggaatccaaaccg
tcaactgaggaagcgagtagcagcattgggactgaaatcaagatcgaaccatctttaaac
actataaaatcagagccagttgttggggaagtccagactacgttactggtaaagcaagaa
tcaggagtagacagtgcagtttccaaaacactagtagagaaagaacaatttaggcaagag
gaaatgaagtcatcgttagatgttctcagggcaaagtcttcacctgtgccattcttggag
gaagtttctctagaggatatggagacagatgctcctgcacttgataccatgccagccgaa
acagttgattcaccatcagctcagatacctggagaggttgcatcaactaaagaattcact
gaagatgcaaagacaattccttctgtactttctgagaatcctttaccaactgatgttgaa
gagcaagctgctactgaaacgggagcaaccacagtggctccttctggatctggagatgca
gccattgcattggatccacctgttgaatccccagcagataatggacatatctctaaaaat
ttacccctcagtgaagccgtggcgacactcggagaatcagaagactccgcagagccccct
gtactggaggtggaagccccattgtcaagcgccagtcaggaccagacaggaaacgctgct
cggttctcttccccaggcatctttgaaaagttgactcctcctcccgcactcaccagcatg
gagagtgaagaatcaaaaccaaatgtggttgaagaaccccctgcagagagttgtacagga
ggtggggatgcgaatcaaaatgccatggaaactcaggaaagtagtacgtga
DBGET
integrated database retrieval system
