Streptomyces fodineus: BFF78_24790
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Entry
BFF78_24790 CDS
T05140
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spun
Streptomyces fodineus
Pathway
spun03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BFF78_24790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spun03400
]
BFF78_24790
Enzymes [BR:
spun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BFF78_24790
DNA repair and recombination proteins [BR:
spun03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BFF78_24790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
UB2H
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
AOR33842
UniProt:
A0A1D7YE63
LinkDB
All DBs
Position
5776590..5780147
Genome browser
AA seq
1185 aa
AA seq
DB search
MSLHGLLDAVVKDPALAEAITAAADGNRMHIDLVGPPAARPFTIAALAREAARPVLAVTA
TGREAEDLAAALRSLLPEEGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPSTDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVSLKTGRTADLNDIVEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDIEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDDVRARARALAEEHPELGELLNKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGAMAV
VCDPERVRTRAADLVTTSQEFLQASWAATAGGGEAPIDVGAASLWSIADVRDRARELDMM
WWSVSPFAADETLTYAADAAGDADTLKLGMHAPETYRGDTARALADTKGWLADGWRTVFV
TEGHGPAARTVEVLGGEGIAARLDADLGELSPSVVHVSCGSIEYGLVDPALKLAVLTETD
LSGQRATGREGARMPARRRKTIDPLTLEAGDYIVHEQHGVGRYIEMVQRTVQGATREYLV
VEYAPAKRGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAA
DLIKLYSARMAAPGHSFGADTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLI
CGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYAQFPVSVKALSRF
QTDTEAKAVLEGLKDGAVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLR
ANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEERQIGAAIRREL
LREGQVFYIHNRVESIDRAAARLREIVPEARIATAHGQMSESTLEQVVVDFWEKKSDVLV
STTIVESGIDISNANTLIVERGDTFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETA
HERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADY
RRQLETGEIEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANSEEDIKAVREE
LTDRYGKLPEPVENLLLVAGLRMLARACGVGEIVLQGTNIRFAPVELRESQELRVKRLYP
GTVIKPAVHQVLVPRPKTAKVGGKPLVGRELLGWVGEFLASILGS
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtcgtcaaggaccccgccctcgcggaagcgatc
acggcggccgcggacggcaaccgcatgcacatcgacctcgtcggccccccggcggcccgc
cccttcacgatcgccgccctcgcccgcgaggccgcccgcccggtgctcgcggtgaccgcg
acgggccgcgaggccgaggacctggcggctgccctgcgctccctgctgcccgaagagggc
gtcgtggagtacccctcctgggaaaccctcccgcacgagcggctcagcccccgcagcgac
accgtgggccgccgcctcgccgtcctgcgccgcctggcccaccccagtaccgacgacccc
gagacgggccccgtctccgtcgtcgtcgcacccgtgcgctccgtgctgcaaccgcaggtc
aagggcctcggcgacctggagccggtgtccctgaagaccggccggaccgccgacctgaac
gacatcgtggaagccctcgcggccgccgcctacgcgcgcgtggagctcgtcgagaagcgc
ggcgagttcgccgtgcgcggcggcatcctggacgtcttcccgcccaccgaggaacacccg
ctgcgcgtggagttctggggcgacgacatcgaggagatccgctacttcaaggtcgccgac
cagcgctccctcgaagtcgccgagcacggcctgtgggcaccgccgtgccgcgagctgctg
ctcaccgacgacgtacgggcacgcgcgcgtgccctcgccgaggagcaccccgagctgggc
gaactgctgaacaagatcgccgagggcatcgcggtcgagggcatggagtccctcgccccc
gtcctggtcgacgacatggaactgctgctcgacgtgctccccaagggcgcgatggccgtc
gtctgcgaccccgagcgggtacgcacacgtgccgccgacctggtgaccacctcccaggag
tttttgcaggcctcctgggcggccaccgccggcggcggcgaggccccgatcgacgtcggc
gccgcctccctgtggtccatcgccgacgtccgcgaccgcgcgcgcgagctggacatgatg
tggtggtcggtgtcccccttcgcggccgacgaaacgctcacatatgccgctgacgcggcg
ggcgacgcggacaccctcaaactcggcatgcacgcgcccgagacctaccgcggcgacacc
gcgcgggccctcgccgacaccaagggctggctcgccgacggctggcgcacggtgttcgtc
accgagggccacggcccggccgcccgcacggtggaggtgctcggcggcgagggcatcgcc
gcccgcctggacgcggacctcggcgaactgagcccgtcggtggtgcacgtctcctgcggc
tccatcgagtacggcctcgtggacccggccctcaagctcgccgtgctcaccgagaccgac
ctctccgggcagcgcgcgaccggccgcgagggcgcccggatgcccgcccggcgccgcaag
accatcgacccgctcaccctggaggcgggcgactacatcgtccacgaacagcacggcgtc
ggccgctacatcgagatggtgcagcgcacggtgcagggcgccacccgcgagtacctggtc
gtcgagtacgcgcccgccaagcgcggccagcccggtgaccgcctctacatccccaccgac
cagctggagcagatcaccaagtacgtcggcggcgaggcacccaccctgcaccggctcggc
ggcgccgactggacgaagaccaaggcacgcgcgaagaaggccgtcaaggagatcgccgcc
gacctgatcaagctctacagcgcgcgcatggccgcccccggccactccttcggcgccgac
acgccgtggcagcgcgagctggaggacgccttcccctacgccgagaccccggaccagctc
accaccatcgccgaggtcaaggaggacatggagaagtcggtccccatggaccggctgatc
tgcggcgacgtcggctacggcaagaccgagatcgcggtgcgggccgccttcaaggccgta
caggacggcaaacaggtcgccgtcctcgtaccgacgacgctgctggtgcagcagcacttc
gggacgttctccgagcggtacgcgcagttcccggtgagcgtgaaggcgctgtcccgcttc
cagaccgacaccgaggccaaggccgtcctggagggactgaaggacggcgcggtggacatc
gtgatcggcacccaccgcctgttctcctccgagacgaagttcaaggacctcggcctggtc
atcgtcgacgaggaacagcgcttcggcgtcgagcacaaggagcagctgaagaagctccgc
gccaacgtcgacgtgctgaccatgtcggcgacccccatcccgcgcaccctggagatggcg
gtcaccggcatccgtgagatgtccacgatcaccacgccccccgaggagcgccacccggtg
ctcaccttcgtcgggccttacgaggagaggcagatcggcgcggccatccgccgtgaactg
ctgcgcgagggccaggtcttctacatccacaaccgcgtcgagtccatcgaccgcgcggcg
gcgaggctgcgcgagatcgtccccgaggcacgcatcgccacggcccacggccagatgtcg
gagtcgacgctggagcaggtcgtcgtcgacttctgggagaagaagtccgacgtcctcgtc
tcgaccacgatcgtcgagtccggcatcgacatctccaacgccaacaccctcatcgtggag
cgcggcgacaccttcggcctgtcccagctgcaccagctgcgcggccgcgtcggccggggt
cgcgagcgcgggtacgcctacttcctgtacccgccggagaagccgctgaccgagaccgcg
cacgagcgcctggccaccatcgcccagcacaccgagatgggcgcgggcatgtacgtggcg
atgaaggacctggagatccgcggcgccggcaacctcctgggcggcgagcagtccgggcac
atcgcgggcgtcggcttcgacctgtacgtccgcatggtcggcgaggccgtcgccgactac
cggcggcagctggagaccggcgagatcgaggaggagccgccgctcgaggtcaagatcgag
ctgcccgtcgacgcgcacgtcccgcacgactacgcgcccggcgagcgcctgcgcctgcag
gcctaccgggccatcgcctccgccaactcggaggaggacatcaaggccgtccgcgaggaa
ctcaccgaccgctacggcaagttgcccgaaccggtggagaacctgctgctggtggccggt
ctgcggatgctcgcgcgcgcgtgcggcgtcggtgagatcgtgctccagggcaccaacatc
cgcttcgcaccggtggagctgcgcgagtcccaggaactgcgggtcaagcgcctctacccc
ggcacggtcatcaagccggccgtgcaccaggtgctggtcccgcgcccgaagaccgcgaag
gtcggtggcaagccgctggtcggccgcgaactgctgggctgggtcggcgagttcctcgcc
tccatcctggggtcgtag
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