Sphingobium sp. YG1: YGS_C1P0831
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Entry
YGS_C1P0831 CDS
T05858
Name
(GenBank) bifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
spyg
Sphingobium sp. YG1
Pathway
spyg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
spyg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
YGS_C1P0831
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spyg03400
]
YGS_C1P0831
Enzymes [BR:
spyg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
YGS_C1P0831
DNA repair and recombination proteins [BR:
spyg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
YGS_C1P0831
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
BBC99575
UniProt:
A0A2Z6AC74
LinkDB
All DBs
Position
1:complement(885467..887845)
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AA seq
792 aa
AA seq
DB search
MQKHAATRLHYDFRLELDGTLVSWAVTRGPSANPDDKRLAVRTEDHPLDYARFEGTIPKG
EYGGGTVMLWDNGTWDPVPGKDPTKTLAEGHLHFTLHGRRMKGEWIMFRLKPRGKEKGEN
WILRKVEDEFAGGSDDLIGIHLTSVDSGRTMEEIAAGEPIRRQGGKAKAPATTPKSSTAA
ARKGKNKGKLPPFQPVQLAALVDHVPPGDRWLHELKYDGYRTLIAVGGGEGRAYTRSGLD
WSDRFADIITEAAQLDVGSALIDGEAVVTLPDGRTSFQALQAALKDNPGTIDYFAFDLLE
LNGEDLTSLPLIERKEKLASILEGHKGRLRYSDHIVGNGEKLLTSFCEAGLEGVISKRVD
ARYSGSRSGSWVKTKCIRRQEFVIVGWTPSDKQRGFRSLLLGVNEDGKLRYAGKVGTGFT
GDEIERLLEIMAPLARKEPTVQAPRSAVRGAHWIEAKLVAEIAYLEFTDEGLLRHPSYLG
LREDKKPEAVVIEKEAPVAVATAAPASTVKVSNRDRVIFPEGKLTKGQLADYYEVVAPIM
LPWAGSRPISLVRCPQGRAKKCFFQKHDAGSFGDDVKHIGIREKDGHEEAYLFIDAPAGL
LTCVQMGTIEFHGWGARIEDVEKADRLVFDLDPDEGLGFKEVVSAAFNMRDLLGEMGLTT
FPMVTGGKGVHVIAPLTPSAEWRVVKDFAHRFAQAVEQAQPDRYTAALSKSRRTGRIFID
YLRNQRGATAVMPYSARSREFAPIAVPLTWDELHDLDKPSHWHIGDGAEMLKRASSKNLA
HWGRADQLLPDL
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
gtgcagaagcatgccgcgacccgcctgcattatgacttccgcctcgagctggacggcacg
ctggtcagctgggcagtgacccgagggccaagcgccaaccccgacgacaagcgattggct
gtccgcaccgaagaccacccgctcgactatgcccggttcgaggggaccattcccaagggg
gagtatggcggcggcaccgtgatgctttgggacaacggcacctgggatccagtcccgggc
aaggatcccaccaaaaccctggccgaaggtcatctgcattttacgctgcatggccgccgc
atgaagggcgagtggatcatgtttcgcctcaagccgcgaggaaaggagaagggcgaaaac
tggatcctgcgtaaggtcgaggacgagtttgccggtggctcggacgacctcattggcatc
catctcacgagcgtcgacagcggacgcaccatggaagaaatcgccgcaggcgagccgatc
cggagacagggcggcaaggctaaagctccggctacgacgccgaaatcatcgaccgctgca
gcccgaaagggcaagaacaagggcaaactcccgccattccagcctgtccagcttgcggct
ctcgtcgatcacgtgccacctggcgatcgctggctgcatgagttgaaatatgacggctat
cgaacgctcatcgccgtcggtggcggggaaggacgggcctatacccggtcgggtctggac
tggtcggatcggttcgcagatattatcacagaggctgcacagcttgacgttggaagcgcg
ctgatcgacggtgaggcggtggtgacgctgcctgatggccggaccagttttcaggcgttg
caagccgctctgaaggataaccctgggaccatcgactatttcgcgttcgacctgctggaa
ttgaacggcgaggatctcaccagcttgccgctgatcgagcgtaaggagaagctggcgagc
attcttgagggccacaagggtcggctgcgctattcagatcatatcgtcggcaacggtgaa
aagctgctgaccagcttttgcgaggcggggctggaaggggtcatatcgaaacgcgtcgac
gctcgatatagcggctcgcggagcggtagctgggtcaagaccaagtgcatccgtcggcag
gagttcgtgattgtaggctggacgccttccgacaagcagcgagggttccgctcgcttctt
ttgggcgtaaacgaggatggaaagctgcgctacgccggcaaggtcggcacgggatttacc
ggcgatgagatagagcgtcttctagaaatcatggcacctctcgcgcgcaaggagccgacg
gttcaggctccgcggtctgctgtgcgcggtgcccactggatcgaagcgaaactggttgcc
gagattgcctacctagagtttaccgatgaggggctgctgcgccatcccagctaccttggg
cttcgagaggacaagaaacccgaagcggtcgtgatcgagaaggaggccccggtggcggtt
gcaacggcggcgcccgcgagcacggtgaaggtgagcaaccgagaccgggtgatctttccg
gagggcaagctcaccaagggtcagctggcagactattacgaagtggtcgcaccgatcatg
ctgccctgggcggggagcaggcccatcagtctcgtgcgttgcccgcaaggccgcgcgaag
aagtgtttctttcagaagcatgatgcgggcagcttcggcgatgacgtcaagcacatcggc
attcgcgaaaaggacgggcatgaagaggcctatctctttatcgacgcgccggcaggtctg
ctgacctgtgtgcagatgggtacgatcgagttccatggctggggcgcgcggatcgaggac
gtcgaaaaagccgacaggctggttttcgatctcgaccccgatgagggccttggcttcaag
gaagtggtctcggctgccttcaacatgcgggacttgctgggtgagatgggacttacgacg
ttcccgatggtgacgggcggaaaaggggttcacgtgatcgccccgctcaccccgtcagcc
gaatggcgggtggtgaaggattttgcccatcggttcgcgcaagccgtggagcaagcgcag
ccggatcgctacaccgccgctttgtcaaaatcccggcggaccggccgcattttcatagac
tacctgcgcaaccagcgcggcgcgacggctgtcatgccctatagcgcccgcagtcgtgag
tttgcgccgatcgccgttcctctgacatgggacgaactgcatgatctcgacaagccttcg
cactggcacatcggagacggagccgaaatgctgaagcgcgcgtcgtcaaagaacctcgcg
cactggggacgggccgaccaactgttgcccgatttgtaa
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