Sphingosinithalassobacter tenebrarum: G5C33_03280
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Entry
G5C33_03280 CDS
T06464
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
spzr
Sphingosinithalassobacter tenebrarum
Pathway
spzr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
spzr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
G5C33_03280 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spzr03400
]
G5C33_03280 (ligD)
Enzymes [BR:
spzr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
G5C33_03280 (ligD)
DNA repair and recombination proteins [BR:
spzr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
G5C33_03280 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QIG78905
UniProt:
A0A6G6Y1V3
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All DBs
Position
653175..655697
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AA seq
840 aa
AA seq
DB search
MAEPDLLARYNEKRDFAKTREPKGATGKSGGNRFIVQKHDATRLHWDFRLEADGVLKSWA
VTRGPSLDPGEKRLAVRTEDHPLSYADFEGTIPQDQYGGGTVMLWDSGTWEPVEGKSAED
LARGHLHFRLHGQRMQGEWLLIRMKPRGKEKRENWLLRKIDDSFAGGTDMLVEQGLTSVQ
TGRTMQEIAEGKDPEFRPRRGRGTSEAGGGVVAASDSPDENTPPPRRSASRSPSPSGGRK
LPKFRDVQLATLVDTVPGGNRWLHEVKYDGYRALLAIGKGGPRIFTRSGLDWTDKFPGIA
EASTSIAAESALIDGEIVAFKEGRPDFSTLQEAISAGGTGLTFFAFDLLECDGKDLTKLP
QIQRKERLRPLLGNADERIAFAEHVLGAGEKLYAAMCREGYEGIVSKRADAPYRGTRTRN
WLKVKCTRRQEFVIVGWLPSSSKGRAFASLLLAVQGKDGLEYRGKVGTGFDTEMMDDVRS
KLDRLARKTPPLDVPKSAARGAQWVTPGLVAEIAFAEYTAENVVRHASFQGLREDKAAED
VVDENAQPVPEPAQSDVKITSRDRVIFPDAKVTKGDLADYYAAVAPIMLPWIADRPISLV
RCPQGRAKQCFFQKHDAGSFGDHVRHVDIREKDGSTEPYLYVDDADGILACVQMGTIEFH
GWGARASDVETPDRMVFDLDPDEGLDFRDVKKAAEDLKQHLADIGLTSFPMLTGGKGVHL
VVPLAPRAHWPEVKSFAERFARAIAQSEPDRFTANLKKASRKGKIFIDYLRNQRGSTAVL
PYVARARPGAPVAVPVTWSELRDINSPQHWNVRDADTLIERANSRALSGWGETEQALPDL
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atggccgaacccgatctcctcgcccgctataacgagaaacgcgatttcgcgaagacgcgg
gagcccaagggcgcaaccggcaaatcgggcggcaatcgcttcatcgtgcagaaacatgac
gccacccggctccactgggacttccgccttgaagccgatggcgtgctcaagagctgggcg
gtgacgcgcgggccgagcctcgatccaggcgaaaagcggctcgcggtgcgtaccgaggat
catccgctgagctatgccgatttcgaagggacgattccgcaggatcaatatggcggcggt
acggtgatgctgtgggattcgggaacctgggagccggtcgaaggcaagagcgccgaagat
ctcgccagggggcatttgcatttccggctgcatgggcagcggatgcagggcgagtggctg
ctcatccgaatgaagccgcgcggcaaggaaaagcgcgagaactggctgctgcgcaagatc
gacgattcgttcgcgggcggcacggacatgctggtcgagcaggggctgaccagcgtgcag
accggccggacaatgcaggagattgccgagggcaaggaccccgaattccgcccccgtagg
gggagggggaccagcgaagcgggtggaggggtagttgccgcaagcgattcgcccgacgaa
aatacccctccaccacgacgctccgcgtcgcggtccccctccccctccgggggaagaaaa
ctccccaaattccgcgacgtgcagctagcgacgctcgtcgacaccgtccccggcggaaac
cgctggctgcacgaagtcaaatatgacggctatcgcgcgctgctcgctatcgggaagggc
gggccgcgcatcttcacgcgttccggtctcgactggaccgacaaattccccggtatcgcc
gaagcctcgaccagcatcgctgccgagagtgcgttgatcgacggcgagatcgttgcgttc
aaggaggggcgccccgatttctcgacgctgcaggaagcgatttcggcgggcggcacgggg
ctaaccttcttcgccttcgacctgctcgaatgcgacggcaaggacctgaccaaactcccg
cagatccagcgcaaggagcggctgcgcccgttgcttggcaatgccgacgaacgcatcgcc
ttcgccgaacatgtcctcggcgcgggcgagaagctctacgccgcgatgtgccgcgaaggc
tatgaaggcattgtctcgaaacgcgccgacgcgccctatcgcggcacgcggaccaggaac
tggctcaaggtgaaatgcacccggcggcaggaattcgtcattgtcggctggctgccgagc
agttcgaaggggcgcgccttcgcgtcgctgctgcttgccgtgcagggcaaggatgggctc
gaatatcgcggcaaggtgggcaccggattcgataccgaaatgatggatgacgtccggtca
aagcttgatcggctggcgcgcaagacgccgccgctcgacgtgcccaaatcggcagcgagg
ggcgcgcaatgggtgacgcccggacttgtcgccgaaatcgcctttgccgaatatactgcc
gagaatgtcgtgcggcatgccagtttccaggggctgcgcgaggacaaggcggcggaggat
gtcgtggacgaaaacgcccagcccgtgcccgaaccggcgcaatcggacgtgaagatcacg
agccgtgaccgggtgatcttccccgatgcgaaagtcaccaagggcgacttggccgattat
tacgccgcggtcgcgccgatcatgctcccctggatcgccgaccggccgatcagcctcgtc
cgctgtccgcaggggcgcgccaagcaatgtttcttccagaagcacgatgccggcagcttt
ggcgaccatgttcgccatgtcgacattcgcgaaaaggacggatcgaccgaaccctatctc
tatgtcgacgatgccgacggcatattggcctgcgtccagatgggcacgatcgagtttcac
ggctggggcgcacgcgcgagcgatgtagaaacccccgatcggatggtgttcgatctcgat
cccgacgaagggctcgatttcagggatgtgaagaaggccgccgaggacctgaaacagcat
ctcgccgatatcgggctcaccagctttccaatgctcaccggcggcaagggcgtccatctg
gtcgtccctctcgcgccgcgtgcgcactggcccgaagtgaagagctttgccgaacgcttc
gcgcgcgccatcgcgcagagcgaacctgatcgcttcaccgccaacctcaagaaggcgagc
cgcaagggaaagatcttcatcgattatctgcgcaaccagcgcggatcgacggcggtgctg
ccctatgtcgcgcgcgcccgaccgggcgccccggtggcggtgccggtgacgtggagcgag
ctgcgcgacatcaattcgccgcaacactggaacgtcagggacgccgatacgctgatcgaa
cgcgcgaacagccgagcgctttctggctggggcgaaaccgagcaggccctgcccgatcta
taa
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