Serratia sp. AS13: SerAS13_0119
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Entry
SerAS13_0119 CDS
T02012
Name
(GenBank) ATP-dependent RNA helicase rhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
sra
Serratia sp. AS13
Pathway
sra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SerAS13_0119
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sra03019
]
SerAS13_0119
Enzymes [BR:
sra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SerAS13_0119
Messenger RNA biogenesis [BR:
sra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SerAS13_0119
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CCDC138_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEG25942
UniProt:
A0A7U4DUN4
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All DBs
Position
complement(141092..142381)
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AA seq
429 aa
AA seq
DB search
MSKTHLTEQKFSDFALHPLVLEALEKKGFHHCTPIQALALPLTLSGRDVAGQAQTGTGKT
LAFLASTFHYLLSNPAKQDRQTNQPRALIMAPTRELAVQIHSDAEALSQSTGLKLGLAYG
GDGYDKQLKVLESGVDILVGTTGRLIDYAKQNYIDLGAIQVVVLDEADRMYDLGFIKDIR
WLFRRMPAVDQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIQEELFYPSN
EEKMRLLQTLIEEEWPDRCIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILE
DFTKGNLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLA
CEEYALNLPAIETYTGHSIPVSKYNSDALLTDLPAPKRLARPRGGNGPRRNSAPRRGGSA
PRNNRKRPG
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacttgaccgaacagaagttttccgacttcgccctgcacccgttagtc
cttgaagcccttgaaaaaaaagggtttcaccattgcacgcctatccaggcgttagcattg
ccgctcacgctctccgggcgtgacgttgcaggtcaggcgcaaaccggtaccggaaagacg
ttggcatttttagcgtctacttttcactatttgctttctaacccggcgaaacaggatcgc
cagaccaaccagccgcgtgccttgatcatggcgccaacgcgtgaactggcggtgcagatc
cactccgatgcggaagccctgtcccagtccaccggcctgaaacttggcctggcttacggc
ggcgacggctacgacaaacagctgaaagtgctggaaagcggcgtggatatcctggtgggt
actaccggtcgtttaatcgattacgccaaacagaactacatcgatctgggcgcgatccag
gtcgtagtgctggacgaagccgatcgcatgtacgatctgggctttatcaaagacattcgc
tggctgttccgccgcatgcctgcggtcgatcaacgcctgaacatgctgttctctgccacc
ctgtcctatcgcgtacgcgaactggctttcgagcagatgaacaacgctgaatatgttgaa
gtggaaccggaacagaaaaccggccaccgcattcaagaagaattgttctacccgtccaac
gaagaaaagatgcgcctgctgcagacgctgatcgaagaagagtggccggaccgctgcatc
atcttcgccaacaccaagcatcgctgtgaagacgtctggggccatttggcggccgacggg
caccgcgtaggcctgctgaccggcgatgtggcgcagaaaaaacgcctgcgtattctggaa
gacttcaccaagggcaacctcgatattctggtcgccaccgacgtcgccgcccgtggtctg
cacatcccgttggttacgcacgtattcaactacgatctgcctgacgactgcgaagactat
gttcaccgcatcggtcgtaccggccgtgccggcgaaagcggccattccatcagcctggcc
tgcgaagagtacgcgctcaacctgccggcgatcgaaacctataccggccacagcattccg
gtgagcaagtacaacagcgacgcgttgctgactgacctgcctgcgccgaaacgccttgcg
cgtccacgcggcggcaatggcccgcgccgtaattccgcaccgcgtcgcggtggcagcgcg
ccacgcaataaccgtaaacgtccaggctga
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