Sphingomonas radiodurans: LLW23_12915
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Entry
LLW23_12915 CDS
T08717
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
srad
Sphingomonas radiodurans
Pathway
srad03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
srad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LLW23_12915 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srad03400
]
LLW23_12915 (ligD)
Enzymes [BR:
srad01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LLW23_12915 (ligD)
DNA repair and recombination proteins [BR:
srad03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LLW23_12915 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WBH15713
LinkDB
All DBs
Position
complement(2747651..2750131)
Genome browser
AA seq
826 aa
AA seq
DB search
MSTDPLARYNAKRDFSKTAEPAGTLAPGNGNSFMVQKHDASRLHWDFRIEMDGVLKSWAV
TRGPSLDPNEKRLAVRTEDHPLSYATFEGTIPKGEYGGGTVMLWDRGTWSVIKGKSNKDL
DEGHLHFVLDGERMKGEWLLIRLKPRGKEKSENWLLRKIDDAHAGGTDTLVETGLTSIET
GRTMLEIAEGKKPAAEPKKRKATAKAKSAPEQVSPAHRRVRKNTGTPPAFTEPQLCTLVD
AVPAGSTWLHEVKYDGYRALIAVGGGTAKVHTRSGLDWTDKFQAIADAAAELDVGTALLD
GEIVAFKDGRPDFSTLKNAISASGDMTFFAFDLLEQDGEDLRPLPNVQRKERLRAIIPGG
DRIQFSEHVIGSGEQLFETMCKEGFEGIVSKQADAPYRGARTKAWLKVKCTRRQEFVIIG
WTPSEKTRGFRALLLGLHEDGELRYAGKVGTGFSNDTMIDLGERLAKLARKTPTVEVPKN
LRTAVKGAHWVTPKLVAEIAFAETTPDGVLRHSSFLGLRGDKPASEVVAEKPEPAPAAPT
STVKVSSRDRLLFPDSTITKGDLADYYAQVAGIMLPWSARRPISLVRCPQGRGKKCFFQK
HDAGSFGDHVHQVPILEKDGSTENYLYVDDADGLVGCVQMGTIEFHGWGSSIDHLEQPDR
LVFDLDPDEGLDFEDTKKAADYLKNQLAELGLLSFPLLSGGKGVHVVVPLTPGAEWPAVK
SFADRFARALAQAEPDRFVATMSKAKRKGRIFIDWLRNQRGATAIMPFSARAREGAPVAA
PVSWSELRIIDTAARWHVTDAAELIDRANSRALAGWGVADQMLPEL
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgatcccctcgcccgctacaacgccaagcgcgacttctcgaaaaccgccgag
cccgccggcacgctcgcgcccggcaacggcaacagcttcatggtccagaagcacgacgca
tcgcggctgcactgggatttccgaatcgagatggacggcgtcctcaagagctgggccgtc
acgcgcggcccgagcctcgatccgaacgaaaagcgcctcgccgtccgcaccgaggatcac
ccgctcagctacgctaccttcgagggcacgatccccaagggcgaatatggcggcggcacc
gtaatgctatgggatcgcggcacctggtcggtcatcaagggcaagtcgaacaaggatctc
gacgagggccatctccacttcgtcctcgatggcgagcggatgaagggcgaatggctgctc
attcggctgaagccgcgcggcaaggagaagagcgagaactggctactgcgcaagatcgac
gacgcgcacgccggcggcaccgacacgctcgtcgaaaccggcctgacgagcatcgagacc
ggccgcacgatgctggagatcgcggaaggcaaaaagccggccgccgagccgaagaagcgc
aaagccaccgccaaagccaagtcggcacccgagcaggtatcgcccgcccatcgccgcgtc
cgcaagaacaccggcaccccgcccgcctttaccgaaccccagctctgcaccctcgtcgat
gccgtccccgccggcagcacatggctgcacgaggtgaagtatgacggctatcgcgcgcta
atcgccgtcggcggcggcaccgcaaaggtccacacccgcagcgggctcgactggaccgac
aaattccaggccatcgccgacgccgcggctgagctagacgtcggcacggcgctgctcgac
ggcgagatcgtcgcgttcaaggacggccgccccgatttctccacgctcaagaacgccatc
tccgcgagtggcgacatgaccttcttcgccttcgacctgctcgaacaggacggcgaagac
ctgcgcccgctccccaacgtccagcgcaaggagcgcctgcgcgcgatcatccccggcggc
gatcgcatccagttcagcgaacacgtcatcggctcgggcgagcaattgttcgagacgatg
tgcaaggaaggcttcgaagggatcgtctcgaagcaggccgatgcgccttatcgcggcgcg
cgcaccaaggcgtggctcaaggttaaatgcacccggcgccaggaattcgtcatcatcggc
tggaccccgtcggaaaaaacgcgcggcttccgcgcgctgctgctcggcctgcatgaggat
ggcgaactgcggtacgccggcaaggtcggcaccggcttttccaacgatacgatgatcgac
ctcggcgagcggctcgccaagctcgcgcgcaagacgccgacggtcgaggtgcccaaaaac
ctgcgcaccgccgtgaagggcgcgcattgggtcacgccaaagctcgtcgccgagatcgcc
ttcgccgaaaccacgcccgatggcgtgctgcgccattcgagcttcctcggcctacgcggc
gacaagccagcgagcgaggtcgtagcggaaaagcccgagcccgccccggccgcccccacg
tcgacggtgaaggtcagcagccgcgatcggctgctcttccccgattcgacgatcaccaag
ggcgatctcgccgattactacgcacaggtcgccggcatcatgctgccatggagcgcacgc
cgcccgatcagcctcgtgcgctgcccgcaggggcggggcaagaaatgcttcttccagaag
cacgacgccggctcgttcggcgatcacgtccatcaggtgccgatcctcgaaaaggacggt
tcgaccgagaattatctctacgtcgacgatgccgatggcctcgtcggatgcgtgcagatg
ggcacgatcgagttccacggctggggatcgtcgatcgaccatctcgaacagcctgatcgc
ctcgtgttcgatctcgatcccgacgaagggctcgacttcgaggataccaagaaggccgcc
gactatctcaagaaccagctcgccgagctcggcctcctcagcttcccgctgctctcgggc
ggcaagggcgtccatgttgtcgtgccgctgacgccaggtgccgaatggcccgccgtaaag
agcttcgccgatcgcttcgcgcgcgcgctggcgcaggccgagcccgaccgcttcgtcgcc
accatgtccaaggcgaagcggaaggggcgcatcttcatcgactggctacgcaaccagcgc
ggcgcgaccgccatcatgccgttcagtgcccgcgctcgcgaaggcgccccggtcgcggca
ccggtatcgtggtccgagctccgtatcatcgacaccgcggcacgctggcacgtcaccgac
gccgccgaactgatcgaccgcgccaacagccgcgccctcgccggctggggcgtggcagat
cagatgctgcctgagctgtaa
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