Salpingoeca rosetta: PTSG_02304 Help Entry PTSG_02304        CDS       T04136                                  Name (RefSeq) uncharacterized protein   KO K20103   ATP-dependent RNA helicase DDX60 [EC:5.6.2.7] Organism sre  Salpingoeca rosetta Brite KEGG Orthology (KO) [BR:sre00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:sre03019]     PTSG_02304 Enzymes [BR:sre01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.7  DEAD-box RNA helicase      PTSG_02304 Messenger RNA biogenesis [BR:sre03019]  Eukaryotic type   mRNA degradation factors    3'-5' decay     Exosome cofactors      PTSG_02304 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DEAD Helicase_C ResIII Motif Other DBs NCBI-GeneID:  16077386 NCBI-ProteinID:  XP_004996793 UniProt:  F2U1T7 LinkDB All DBs Position Unknown AA seq 2091 aa AA seqDB search MVEEDSNQPAVPQQQHAAERDLLYKAFAEVSVAYTDVTGQFGVTPACPSCIDVSALVNYA INLNLEKLGAESAVDIKPEEEEALLHKVQWLLVVHYVENIVEQFHTNGVPFNLIIFENKA AAVPSARAALHAAVLAHLQHNTELNVQVVPSPHSEAWAHFVELKLPSMLITEYPKTMDTE YHTQCYANLWCLTHDAVPVVLFDHMENHNPRFTGYHLDPRALDTVDEHLTEAVRVLIKES VPAANIVMQDVAELHRLVPDGVNAAKTIALAGALAEADLKSPEERTIGALFFLQGLFTDA LKLEDMCFRGVVLPTDASKTTQACPAIVTRLIEQMRLFPQHQDGLAPTHYDGKVLHTMLA YAHLPGSQPATIGSIAATFTVADELKACAGLIKQLNLEWLLPDTALAVEGCDAAVAAWRD TQSAVQAEAGTHGGDAALELHPVRQNALLADILLDDDHTEDLHTQDSLAIEKLRGNGATE WDDATFQRDRPMYVRFSNDDEEELTEEEIEKLNRHQQNEAFRNAVEAYIRLARNRRLIHE RDARPLLEEAVRKAPGAWQRRLRSCLDRNHWAAALPVCLKARKAFDAARARQRLAAFNTK FAQTLLGQLQRMNLDAAPQEKQKAPKTAHCVRVFAREIVGGQKRLDAVKATLAELRDMAK KARTARTEKSIGDWFFKEKRLFEYDGKPVEETLMYEEDVLGISKPAPNAKQAIADFKKLR YREQLREYRAEAAVIAMEMHLLRLDCHLEEEESRAEAGTANEEDTMNHHDYDPCVLSKTD HLTVAVTNALLDLIEEMCDTSSKLHEHVLKLHPRVLSAMLQLHFEEDAKKVLKLLQAKFD VTTTLEGLESSRDLGIPSTTLIDFQLRAMGPYFQRPKGNPDERSPFFDPDDWQVELLDAV DARRSALISAPTSSGKTFISFYAMEKVLRARADLDDPKTKADADKQVIVYVSPTKALVNQ TVAEIEGRYSKKMPRGQVLATAFTKEFGMEEYKSCQVLVTVPECLEHLLLMAGDEGWKHR IKWVILDEVHSVSLNEGFFWERLLTLIDCPFLALSATIGNTESFISWLEALERERLARRG GDVTQPLVKIRHHLRWNDLDTWCYDLDNSRMVTVNPLGVLSPAKLVLDGFPSGCRLLPEH AYELWSIASDIMKQRESLPAATRALLQPLDPSAWFVKHQPLAGDAEHGLCGRVRVKSYAE YEEQLKAKLTDLAREDRELLEELAAEVGDRIERPSRNMLADRDLQDGAHLLSFLRHMCNG PANRLPALLFHLDMAGIDRILESLHFALCREQDEHYYLHDVVGGSHSRLNEAHAKHLQEA REAVDRYMHELKEAVQHITDEKKREEELQARIDKETDRQLERLWGETYEEMNRKWLERTK AAAEAKARAYINQLIADGQLPRNEAAMRQQLEDDHVSAEVDRLSAERMRPFCLSELPVSL EDLADAFPKSNKQKMQRKLESSLFHQALRRGIGIHYPELTKDRRQAVERLFRDRKLAVVI STDTLALGISMPCRSVVFLGDNPALDSLNYHQMSGRAGRRGHDIRGHVVFYGISKHKIRR LLSSPLRQMFPNIPLDSSTAVRAMARFQEAKGTLKEKEGLSLRRLLLEPYATQDAERQAM LPVYMRAQLETLLRLNLLTFDTNPKLLAYREAKAEERRRLREEGEAEEAALLAAERAKEE EEKAKEEEAQEGEEVPDDWEALLGGDEDDEDDKDDDDTAESWEALANEAEEGGESAAEPD ADDAQRVDADEEEEELELEEAADPDAPLAFAGPVVGRIGSMVSYLACHDPNNVWMAYLVR TGALSQFLSPTTEAERLTHDERSDRLELFRAILLSMPQPRVHPTEVHHTKRMFPDAQDVY LVQPALSDALHQAAVNFRAQVLDTFASILRLHGLRKAPAGAGVGLPLSKDKGQVGGSKGL PSDLQELKVCDPLRLPTAAVSGRGFGYDSVRELLLEIQRLPGLSADIVPIPACVDERQPH LLGIMYDIYRRGDLKTLLPQAKLHANTFYSSAALFHHNAKVLVEALRRRATPTTAATTDA AAEEEPGEATEDASRAATAEPATEGARLVGDLSTVVNDFYGALERVGLIWI NT seq 6276 nt NT seq  +upstreamnt  +downstreamnt atggtggaagaagattctaaccaaccagctgtgccgcagcagcaacatgcggcggagcga gacctgctgtacaaggcgtttgcggaagtgagcgtggcatacacggatgtgacgggccag tttggtgttacaccggcatgcccgtcatgcattgacgtttccgccctcgtcaactacgcc atcaacctcaacctggagaagctcggcgcggagtccgccgtggacatcaagcccgaggag gaggaggctctcctgcacaaggtgcaatggctcctggtcgtccattacgtggagaacatt gtggagcagttccacaccaacggcgtgcctttcaacctcatcatctttgagaacaaggcc gccgcagtgccgagcgctcgggccgcactgcacgccgcagtgctcgcgcacctccagcac aacaccgagctgaacgtgcaggtggtgccctccccgcacagcgaggcctgggcccacttt gtggagctcaagctgccctccatgctcatcacagagtacccaaagaccatggacacagag taccacacgcagtgctacgccaacctgtggtgcctcacccacgacgccgtccctgtcgtg ctctttgaccacatggagaaccacaacccgcgcttcacgggctaccacctcgacccgcgc gccctcgacaccgtggacgagcatctcacggaggccgtgcgcgttctcatcaaagagagt gtcccggcggccaacatcgtcatgcaggacgtcgcggagctgcaccgcctcgtccccgac ggcgtcaacgccgccaagaccatcgcgcttgccggcgcgcttgcggaggccgacctgaag tcgcccgaggagcggaccatcggcgccctcttcttcctgcaaggcctcttcacagacgcc ctcaagctcgaggacatgtgcttccgcggcgtcgtcctgcccacagacgcctctaagacc acccaggcatgccctgcgatcgtcacgcgcctcattgagcagatgcgcctcttcccgcag caccaggacggcctcgcccccacccactacgatggcaaggtcctccacaccatgctggca tacgcccacttgcccggcagccagccggccaccattggcagcatcgcagcaacgttcacc gttgctgacgagctcaaggcctgcgcaggcctcatcaagcagctgaacctggagtggctg ctgcccgacactgcgctcgccgtggaagggtgcgatgccgctgttgccgcctggcgcgac acccagtccgcggtgcaggctgaggccggcacccatggcggcgatgccgccttggagctc catcccgtgcgccagaacgcgctgcttgcagacattctcctcgatgatgaccacacggag gacctgcacacccaggacagtcttgccattgaaaagcttcgcggcaacggcgccacggag tgggacgacgcgaccttccagcgcgaccggcccatgtatgtgcgcttttccaacgacgac gaggaagagctgacggaggaagagattgagaaactcaaccgccaccagcagaacgaggcc ttccgtaacgcggtggaagcgtacatcaggcttgcgcgcaaccgccgcctcatccacgag cgggatgcccgcccgctgctggaggaggccgtgcgtaaggcccccggtgcctggcagagg cggttgcggagctgcctcgacagaaaccactgggctgccgcgctgccagtgtgtttgaag gcacgaaaggcattcgatgctgcacgcgcacgccagcgcctcgccgccttcaacacgaaa ttcgcccaaaccctgctcggacaactccagcgcatgaatctcgatgctgctccccaggag aagcagaaggcgcccaagacagctcactgcgtccgcgtgtttgcacgcgagattgttggg ggccagaagcggctggacgcggtgaaggcgacgctggctgaactgcgagacatggccaag aaggcccgcactgcccgcacagagaagtccattggcgactggttcttcaaggagaagcgc ctctttgagtatgatggcaagcccgtggaggagacgctgatgtacgaggaggacgtgctg ggcatttcaaagccggcgcccaacgccaagcaggccattgccgacttcaagaagctgcgg taccgcgagcagctgcgggaataccgggcagaggccgccgtcattgccatggagatgcac ctgctgcggctcgactgccaccttgaagaggaggagagccgtgctgaagcaggcacagcc aatgaagaggacaccatgaaccatcacgactatgacccgtgcgtcctgtccaagacggac cacctcacggtcgctgtcaccaacgccctgctggacctgattgaggagatgtgtgacacg tcctcaaagctgcatgagcacgtgctcaagctgcacccgcgtgtgctcagcgccatgctg cagctgcactttgaggaggatgcaaagaaggtcctcaagctcctccaggcaaagtttgat gtgaccacgacccttgagggcctggaatcctcgcgcgacctcggcattccgtccacaaca ctcattgacttccagcttcgggccatgggcccttactttcagcggcccaagggcaaccca gacgagaggtctcccttctttgatcctgatgactggcaggttgagctgctggatgcagtt gatgcgcgtcgcagtgccctcatctctgcccccacctccagcggcaagacattcatctcc ttctacgccatggagaaggtgctccgtgcccgcgctgaccttgacgatccaaagaccaag gccgacgcagacaagcaggtcattgtctacgtctcgccaaccaaggctctcgtcaaccag actgtcgcagagattgaggggcgctacagcaagaagatgccgcgtggccaagtactagcg actgccttcaccaaggaatttggcatggaagagtacaagagctgccaagtccttgtgaca gtgccggagtgcctcgagcacctgctgctgatggccggtgatgaaggctggaagcatcgc atcaagtgggtcatcctcgatgaggtacacagcgtgtccctgaacgagggcttcttctgg gagcgcctgctcaccctgattgactgcccgttcctcgccctctccgccacaattggcaac acggagagcttcatttcgtggctggaggccctggagcgcgagcgccttgcccgtcgtggc ggcgacgtcacccagccgctggtgaagatccgccaccacctccgctggaatgacctggac acgtggtgctacgacctcgacaacagccgcatggtcaccgtgaacccgctgggcgtgctg tccccggccaagcttgtccttgacggctttccctcgggctgccgcctgctgccggagcac gcgtacgagctgtggtccattgccagcgatattatgaagcagcgcgagtccctgcctgct gccacgcgtgctctgctgcagccgcttgatcccagcgcgtggtttgtcaagcaccagccg cttgctggcgatgccgagcacggcctgtgcgggcgcgtgcgtgttaagtcgtatgcggag tacgaggaacagctcaaggcgaagctgaccgaccttgcgcgcgaggatcgggagctgctg gaggagcttgctgccgaggttggcgaccgcattgagcgcccctcccgcaacatgcttgcc gaccgcgacctgcaggacggcgcgcacctgctgtcgttcctgcgccacatgtgcaacggg ccggcgaaccggctgcctgcgctgctgttccacctggacatggccggcattgaccgcatc ctcgagtcgctgcacttcgccctctgccgcgagcaggacgagcactactacctgcacgac gtcgttgggggcagccactcccgcctgaacgaagcgcacgccaagcacctacaggaagcg cgcgaggcggtggacaggtacatgcatgagctgaaggaggccgtgcagcacatcacggac gagaagaagagggaggaggagctgcaggcgcgcattgataaggagactgaccggcagttg gagcgcctgtggggagagacgtacgaggaaatgaaccgcaagtggctggagcgaaccaag gctgcggctgaggccaaggcgcgcgcctacatcaaccagctgattgcagatgggcagctg cccaggaacgaggccgccatgcgccagcagctggaggacgaccacgtgagtgcagaggtt gatcgcctgtctgccgagcgcatgcgccccttctgcctgtcagagctgcccgtgtcacta gaggacctcgcggacgccttccccaagagcaacaagcagaagatgcaacgcaagctggag tcgtctctgttccaccaggcgcttcgccgcggcattggcatccactacccggagctgacc aaggaccgccgccaggccgtcgagcgcctcttccgcgaccgcaagctcgccgtcgtcatc tcaacagacacccttgctcttggcatcagcatgccgtgccgctctgttgtgttcttgggt gacaaccctgctctggattccctcaactaccaccagatgtctggtcgcgctggccgtcgt ggacatgacatccgtgggcatgttgtgttctatggtatttccaagcacaagatccgccgc ctcctctcatcccctctccgccagatgttccccaacatcccgctcgactcttccactgcg gtgcgagccatggcgcgcttccaggaagccaagggcacgctgaaggagaaggaagggctg agcctgcgccgcctgctgctggagccgtacgcaacgcaggacgccgagcgccaggccatg ctgcccgtgtacatgcgcgcacagcttgagacgctgctgcgcctgaacctgttgacgttt gacaccaacccgaagctgcttgcttaccgggaggctaaggcggaagagcggcggcggctt cgagaagagggcgaggccgaggaggcggcactgctcgctgctgaacgagcgaaggaagag gaggagaaagcaaaggaggaagaggcacaggagggagaggaggtgcctgacgactgggaa gccctgcttggtggcgatgaggacgatgaagatgacaaagacgacgacgacactgcggag tcgtgggaggcactcgcgaacgaagcggaggaaggcggtgagtccgcggccgagccagat gcggatgacgcacagagggtcgatgccgacgaggaggaggaggagctggagctggaggaa gcggccgaccccgacgctccccttgcttttgctggccctgttgttggccgcatcggcagc atggtgagctacctggcctgccacgaccccaacaacgtgtggatggcgtacctcgtgcgc acgggggccctcagccagtttctgtctccaacaacggaggcggagcgcctgacccacgac gagcgcagcgatcggctggagctcttccgagcgattttgctgagcatgccgcagcctcgc gtgcacccgacagaggtgcaccacacgaagcgcatgttcccggatgcgcaggacgtgtac ctggtgcagcctgcgctgtccgacgccctgcaccaagccgcagtcaacttccgcgcccag gtcttggacacgtttgccagcatcctgcgcctgcacggcctgcgtaaggctcctgctggc gctggcgttgggctgccgctctccaaggacaagggccaggtaggcggcagcaaaggcctg ccgagcgatctgcaggagctgaaggtctgcgaccctctccgcctgcccactgctgctgtg tctggtcgcggcttcggctacgacagcgtgcgggagctgctgcttgagatccagcgcctt ccgggcctctcggccgacattgtgcccattcccgcgtgtgtggacgagcgccaaccgcat ctccttggcatcatgtacgacatctaccgccgcggcgacctcaagacgctgctgccacag gccaagctgcacgccaacactttctactcatctgctgctcttttccaccacaacgcaaag gtgcttgtggaggcgcttcgtcgtcgtgctacgccaaccactgcggcgacgaccgatgct gctgcagaggaggaacctggcgaggccacagaggacgccagccgcgccgccaccgccgag ccggcgacggagggtgcccgccttgtgggcgacctcagcaccgtcgtcaacgacttttac ggtgccctcgagcgcgttggcctcatctggatctaa

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