Sediminicoccus rosea: LHU95_15175
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Entry
LHU95_15175 CDS
T08103
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
srf
Sediminicoccus rosea
Pathway
srf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
srf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LHU95_15175 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srf03400
]
LHU95_15175 (mfd)
Enzymes [BR:
srf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LHU95_15175 (mfd)
DNA repair and recombination proteins [BR:
srf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LHU95_15175 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
MFD_D3
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
UPY35559
UniProt:
A0A9E7A8L9
LinkDB
All DBs
Position
complement(3200490..3204173)
Genome browser
AA seq
1227 aa
AA seq
DB search
MNPSDREAERSVNRPGSDASDREAERSVNRPGGDTSDREAERSVNRPGGDTSDREAERSV
NRPGDDASDRGAERSGKRGAAQGLNVYGAPEGYDALLLRQRRAETQEPVLHVCRDDARMA
RMADALAFFMPEAEILRLPAWDCLPYDRVSPNPELIAERVATLAELTAPPTRPRIVLTTV
NALIQRVPPRTAFADSALLLRKGGRTSIERITAFLETNGYNRTGTVMEPGEYAVRGGILD
LFPSGEAEPLRLDLFGDEIESIRRLDTGTQRSGAHVERLTLRPVGEVFLDPASIERFRSA
YRELFGNAAAEDPLYAAISAGRRHPGMEHWAGLFHATMETLLDYLPGASVSLDSQAEEAL
SARLEMIQDHYEARRIPARISEGEVPYRPAPPGRLYLDRAGWGAMLAQGRQFNFSPFHKP
EGAEGFDAGGRAGRLFTEIRQAGENLFSAYAAHAETERGRGRQPMLAAWTRGSRERLVAL
LRENRVAAEPVDDFYQFQRLSPGVVGVGILGLERGFTAEKLSITAEQDLLGERIARPARR
KKRADQFIADATQIEVGDLLVHQDHGIGRYDGLATIEVSGAPHDCLRMIYDGNDKLFVPV
ENIEILSRFGSETGGVALDKLGGASWQARKSKAKQRIADMAGALIRIAAERQTREAPMMA
PPEGAWDEFCARFPYIETDDQARAIADVLEDLAAGKPMDRLICGDVGFGKTEVALRAAFT
VAMSGSQVAVVVPTTLLARQHHRVFSARFGGLPVKVAQLSRMVTAKDAAAVKAGLADGSV
DIVVGTHALLGKTIGFDNLALVIVDEEQHFGVKHKERLKELEAGVHVLTLTATPIPRTLQ
LALSGVREMSVIATPPVDRLAVRTFIMPWDSLVLREAVQRERFRGGQIFVVVPRIEDMAK
MAERLTEVAPEARVVQAHGRLAPTELEQVMTEFGDGKYDILLATNIVESGLDMPAVNTLI
IHRADMFGLGQLYQLRGRVGRGKQRGYAYLTWPPHHRLSPTSQKRLEVMQTLDNLGAGFT
LASHDLDIRGAGNLLGEEQSGQIREVGIELYQEMLEEAVADLRAGAKRSREADGKFTPQI
NLGLPVLIPETYVQELPVRLGLYRRIGALETDAEVEAIAAEFADRFGPIPVEVENLLQVV
GLKLQCRAAGVEKVDAGPKGVVIAFHKNRFANPAGLVAWVSAQKGLVSLRPDHKLALLRE
LPFDARVKAARGLVANLVRVVEQAKAA
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
gtgaatccgtccgatcgcgaagcggagcgcagcgtgaatcggccgggcagtgacgcgtcc
gatcgcgaagcggagcgcagcgtgaatcggccgggcggtgacacgtccgatcgcgaagcg
gagcgcagcgtgaatcggccgggcggtgacacgtccgatcgcgaagcggagcgcagcgtg
aatcggccgggcgacgacgcgtccgatcgcggagcggagcgcagcggcaagcggggtgct
gcgcagggtctcaacgtctatggcgcgcctgagggctatgacgcgcttcttctccgccag
cgccgcgccgagacgcaggaacccgtcctgcatgtctgccgcgatgatgcccgcatggcc
cgcatggccgatgcgctggccttcttcatgcccgaggcggagatcctgcgcctgccggcc
tgggactgcctgccctatgaccgtgtctcgcccaaccccgagctgatcgccgaacgcgtg
gccacattggccgaactcaccgcgccaccgacgcgtccgcgcatcgtgctgaccacggtg
aatgcgctgatccagcgcgtgccgccgcgcaccgccttcgccgattcggcgctgctgctg
cgcaagggcgggcgcaccagcatcgagcggatcacggccttcctggaaaccaatggctac
aaccgcaccggcaccgtcatggagccgggtgaatacgccgtgcgcggcggcatcctggac
ctcttcccctcgggcgaggcggagccgctccgcctcgatctcttcggcgatgagatcgag
agcatccgcaggctggataccggcacgcagcgcagcggcgcccatgtcgaacggctgacc
ctgcgtccggtgggcgaggtgttcctggaccctgcctcgatcgagcgtttccgctccgcc
tatcgggagttgtttggcaatgcggcagcggaagacccgctgtatgccgccatcagcgca
ggacgccgccacccgggcatggagcattgggccgggctgttccacgcgacgatggaaacg
ctgctcgactatctgcccggggcttccgtgagcctcgattcccaggccgaggaagcgctt
tcggccaggctggagatgatccaggaccactatgaagcccggcgcattcccgcccgtatc
agcgagggcgaagtgccgtatcgcccggcgcccccgggccgcctctacctcgaccgcgcc
ggctggggggccatgttggcccagggccggcaattcaacttctcgcccttccacaagcct
gagggcgccgaggggtttgacgccggcggccgggctgggcggcttttcaccgaaatccgc
caggctggggaaaacctgttctccgcctatgccgcccacgccgagactgagcgcgggcgc
ggccggcagcccatgctggccgcctggacgcggggctcccgcgagcgcctggtggccctg
ctgcgcgagaatcgcgtggcggccgagccagtggacgatttctaccagttccagcggctg
tcacccggtgtggtcggcgttggaattctgggcctggagcgaggcttcaccgccgaaaaa
ctctcgatcaccgccgagcaggatctgctgggcgagcgcatcgcgcgcccagcccgccgc
aaaaagcgcgccgatcaattcatcgcggatgccacgcaaatcgaagtgggcgatcttctg
gtccatcaggaccacggcattggccgctatgatgggctggccaccatcgaagtgagcggt
gcgccgcatgattgcctgcgcatgatctatgatggcaatgacaagctgtttgtcccggtc
gagaacatcgagatcctgtcccgctttggcagcgagacgggcggtgtcgcgctcgacaag
ctgggcggtgcgtcctggcaggcgcgcaaatccaaggccaagcagcgcatcgccgatatg
gcgggcgcgctgatccgcatcgccgcggaacgccagacgcgcgaggcgccgatgatggcc
ccgcccgagggcgcctgggacgaattctgcgcgcgcttcccctacatcgaaaccgatgat
caggcccgcgccatcgccgacgtgctggaggatctggccgcgggcaagcccatggaccgg
ctgatctgcggcgatgtcggcttcggcaagacggaggtggcgctgcgcgccgccttcacc
gtcgccatgtccggcagccaggtggcggtggtggtgccgacgacgctgctggcgcgccag
catcatcgcgtgttttcggcgcgctttgggggcctgccggtgaaggtggcgcagctctcg
cgcatggtgacggccaaggatgcggcggcggtaaaggcgggcctggcggatggctcggtg
gatatcgtggtcggcacgcatgcgctgctgggcaagaccatcggctttgacaatctcgcc
ctcgtcatcgtggatgaggagcagcatttcggcgtgaagcacaaggaacggctgaaggaa
ctcgaagccggcgtgcatgtgctgaccctgaccgcaacgcccattccgcgcaccctgcaa
ctggcgctttcaggcgtgcgggagatgagcgtgatcgcgacgccgccagtggaccggttg
gcggtgcgcaccttcatcatgccctgggacagcctggtgctgcgtgaggcggtgcaacgc
gagcgcttccgcggcggccagatcttcgtggtggtgccgcgcatcgaggacatggccaag
atggccgagcgcctcaccgaagtcgcccccgaggcgcgggtggtgcaggcgcatggccgc
ctggcgccgaccgaactcgagcaggtgatgaccgaattcggcgatggcaaatacgatatc
ctgctggccaccaatatcgtggaatccggcctcgacatgcctgcggtcaacacgctgatc
atccaccgggccgacatgttcggcctgggtcagctctatcagctgcgcgggcgcgtggga
cgcggcaagcagcggggctatgcctatctcacctggccgccgcatcaccggctttccccc
acctctcagaagcggctggaggtgatgcagacgctggataatctcggcgccggcttcacg
ctggcaagccatgatctggacatccgtggcgccggcaatctgctgggcgaggagcaatcc
ggccagatccgcgaggtcggcatcgagctctatcaggaaatgctggaagaggcggtggcc
gatctgcgcgccggcgccaagcgctcacgcgaggcggacgggaaattcacgccgcagatc
aacctcggcctgcccgtgctcatccccgagacctatgtgcaggaactgcccgtgcgcctg
gggctctatcgccgtatcggcgcgctggagacggatgccgaggtggaggcgatcgccgcc
gaattcgccgaccgcttcgggccaatccccgtggaggtcgagaatttgctgcaggtggtg
ggcctcaagctgcaatgccgggctgcgggggtggagaaggtggatgccgggccgaagggc
gtggtgatcgccttccacaagaaccgcttcgccaatccggccgggctggtcgcctgggtc
tcggcgcagaaggggctggtgtcactccggccggaccacaagctggccttgctgcgggaa
ttgcccttcgacgcacgggtgaaggcagcgcgcggcttggtggccaatctggtgcgcgtg
gtggagcaagcaaaggcagcgtga
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integrated database retrieval system
