KEGG   Stenotrophomonas rhizophila: BAY15_0150
Entry
BAY15_0150        CDS       T04500                                 
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
srh  Stenotrophomonas rhizophila
Pathway
srh03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:srh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BAY15_0150
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:srh03400]
    BAY15_0150
Enzymes [BR:srh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BAY15_0150
DNA repair and recombination proteins [BR:srh03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BAY15_0150
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: AOA70584
UniProt: A0A1B2MZ79
LinkDB
Position
197166..199721
AA seq 851 aa
MSLQEYRRKRRFGETPEPDDERRGAVARRPIFVVQLHHASARHYDFRLEADGVLKSWAVP
KGPSLRVGEKRLAVEVEDHPLSYATFEGDIPEGHYGAGHVDVYDHGTWACDGDPLEAIAA
GKVDLVLHGSRLKGGWKLVRTNMKGKQHQWLLIKRDDEEARDTDADALLEEAVPPKRTST
KTVKTIKSTTTTKTSSSRSSRTTRTIKPVARRNADARWAKRALSLEHARDKPYPHDFKPQ
LTDHRDTAPDGETWLHEIKWDGYRLLADVRDGVVALRSRNGLNWTEDFPEVVQAIQALPV
TDLRLDGELVVLDAQGRSDFTGLQKVIDGTAKQPLRYVVFDMPGVAGVDISRAPLLERKT
LLKDLLGDTPGTLAYSDHVLDHGPAVFEASGKAGFEGIISKRVDAPYVNARSPSWVKVKH
ENTDEFLVVGYTDPKGSRSGFGSLLMAVPEKSGLRYVGRVGTGFDDAKLAAMHRQLKALD
TDKAAVELPSHVPFKASSVHWVKPTLVAEVAFRGWAKEGLLRQASFKRLREDKTAKELGA
AASAVPAKAAKATKAPAKAKAPDRAADGVTISHPERVVFANARLTKGDVADYYRQMARWI
LPEVARRPLSLLRCPDGVDKPCFFQKHHGTGLGDAVEAIPLEQKSGREDYLYIEDTEGLL
QLVQMNTLELHPWGASVDDPEHPDRLVFDLDPGEGVTWAAIKAAARDVRDRLQEIGLESF
VRLSGGKGVHVVVPLTPKADWAQAKDFCESFAQAMAEHAPDRYVATMSKAKRTGVIFIDW
LRNARGATSVCSWSLRARPSAGVAVPLRWEELGRVTAADAFALPKALQRAQKLKKDPWEG
IDQVKQVLPAL
NT seq 2556 nt   +upstreamnt  +downstreamnt
atgtcattgcaggagtaccggcgcaagcgccgcttcggtgaaaccccggaacccgacgac
gagcgccggggcgccgtcgcgcgccgacccatcttcgtggtgcagctgcatcacgccagt
gcacgtcactacgatttccggttggaagccgatggcgtgctgaagagctgggccgtgccg
aagggaccgtcgctgcgcgtgggcgagaagcggctggcggtggaggtggaagaccacccg
ctgtcctacgccacgttcgagggcgatattcccgaaggccactacggcgccgggcatgtg
gatgtctacgaccacggcacgtgggcctgtgatggcgacccgctggaggcgatcgccgcc
ggcaaagtcgacctcgtgctgcatgggagccggctcaagggcggctggaagctggtgcgc
accaacatgaaagggaagcagcatcagtggctgctgatcaagcgtgatgacgaggaggcg
cgcgataccgacgcggacgcgctgctggaggaggctgtgccaccgaagcgaacgtcgacg
aagaccgtaaagaccatcaagtccaccacgaccacaaagacaagctccagccgctcttcc
aggacgaccaggacaatcaaaccggttgcacgccgcaacgccgacgctcgctgggcaaaa
cgcgcgctgtcgctggagcatgcacgcgacaagccctatccccacgacttcaaaccccag
ctcaccgatcaccgcgacactgcacccgacggcgaaacctggctgcacgagatcaagtgg
gatggctaccgcctgctggccgatgtgcgcgatggcgtggtggcgctgcgctcgcgcaac
ggcttgaactggacggaagacttcccggaagtggtgcaggccattcaggcactgccggtc
accgacctgcgcctggatggcgagctggtggtgctggatgcgcagggccgcagcgatttc
accggcctgcagaaagtgattgacggcaccgccaagcagccgctgcgctacgtggtgttc
gacatgcccggcgtggccggtgtggatatcagccgcgcgccgctgctggaacgcaagaca
ctgctgaaggacctgctgggtgacacgcccggcacactggcatacagcgaccacgtgctc
gatcacggcccggcggttttcgaggcaagcggcaaggccggcttcgaaggcatcatcagc
aagcgggtggatgcgccgtacgtcaacgcgcgctcgcccagctgggtgaaggtgaagcac
gagaacaccgatgagttcctggtggtgggatacaccgaccccaagggatcacgcagtggc
ttcggctcactgttgatggctgtgcccgaaaaaagcggcctgcgttacgtgggccgcgtg
ggtaccggcttcgatgatgccaagctggctgccatgcaccgccagctgaaggcattggat
accgacaaggccgccgtggaactgccttcgcacgtgccgttcaaggcgagcagcgtgcat
tgggtcaaacccacgttggtggccgaagttgccttccgtggctgggccaaggaagggctg
ctgcggcaggccagcttcaagcgcctgcgcgaagacaagacggccaaggagctgggtgcg
gctgccagtgcggtacctgccaaggccgcgaaggcgacgaaggcacccgcaaaggcgaaa
gcgcccgatcgcgccgccgacggcgtgaccatctcgcaccccgaacgtgtggtgttcgcc
aacgccaggctgaccaagggcgacgtcgccgactattaccggcagatggcgcgctggatc
ctgcccgaggtcgcccgccgcccgctgtcactgctgcgctgccccgatggcgtggacaag
ccgtgcttcttccagaagcaccacggcaccggcctgggcgacgcggtggaagccatcccg
ctggagcagaagagcggccgcgaggactacctctatatcgaagacaccgaaggcctgctg
cagctggtgcagatgaacaccctggaactgcacccgtggggcgccagcgtggacgacccc
gagcatccggaccggttggtgttcgacctggatcccggtgagggcgtgacctgggcggcg
atcaaggccgcagcacgcgatgtgcgcgaccgcctgcaggagatcgggttggaaagcttc
gtacgcctgtccggcggcaagggcgtgcacgtggtggtgccactcacgcccaaggcggat
tgggcgcaggccaaggatttctgcgagtcgttcgcccaggcgatggccgagcacgcaccg
gatcgctacgtggccacgatgagcaaggccaagcgcaccggcgtgatcttcattgattgg
ctgcgcaatgcgcgcggcgccacaagcgtgtgttcgtggtcgctgcgtgccaggccatca
gccggcgtggcagtgccgctgcgctgggaagagctgggacgtgtcaccgccgccgatgcg
tttgcgttgcccaaggcgctgcagcgtgcgcagaagctgaagaaagatccctgggaaggg
atcgatcaggtcaagcaggtgttgcctgcgctgtga

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