Stenotrophomonas rhizophila: BAY15_0150
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Entry
BAY15_0150 CDS
T04500
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
srh
Stenotrophomonas rhizophila
Pathway
srh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
srh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BAY15_0150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srh03400
]
BAY15_0150
Enzymes [BR:
srh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BAY15_0150
DNA repair and recombination proteins [BR:
srh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BAY15_0150
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AOA70584
UniProt:
A0A1B2MZ79
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All DBs
Position
197166..199721
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AA seq
851 aa
AA seq
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MSLQEYRRKRRFGETPEPDDERRGAVARRPIFVVQLHHASARHYDFRLEADGVLKSWAVP
KGPSLRVGEKRLAVEVEDHPLSYATFEGDIPEGHYGAGHVDVYDHGTWACDGDPLEAIAA
GKVDLVLHGSRLKGGWKLVRTNMKGKQHQWLLIKRDDEEARDTDADALLEEAVPPKRTST
KTVKTIKSTTTTKTSSSRSSRTTRTIKPVARRNADARWAKRALSLEHARDKPYPHDFKPQ
LTDHRDTAPDGETWLHEIKWDGYRLLADVRDGVVALRSRNGLNWTEDFPEVVQAIQALPV
TDLRLDGELVVLDAQGRSDFTGLQKVIDGTAKQPLRYVVFDMPGVAGVDISRAPLLERKT
LLKDLLGDTPGTLAYSDHVLDHGPAVFEASGKAGFEGIISKRVDAPYVNARSPSWVKVKH
ENTDEFLVVGYTDPKGSRSGFGSLLMAVPEKSGLRYVGRVGTGFDDAKLAAMHRQLKALD
TDKAAVELPSHVPFKASSVHWVKPTLVAEVAFRGWAKEGLLRQASFKRLREDKTAKELGA
AASAVPAKAAKATKAPAKAKAPDRAADGVTISHPERVVFANARLTKGDVADYYRQMARWI
LPEVARRPLSLLRCPDGVDKPCFFQKHHGTGLGDAVEAIPLEQKSGREDYLYIEDTEGLL
QLVQMNTLELHPWGASVDDPEHPDRLVFDLDPGEGVTWAAIKAAARDVRDRLQEIGLESF
VRLSGGKGVHVVVPLTPKADWAQAKDFCESFAQAMAEHAPDRYVATMSKAKRTGVIFIDW
LRNARGATSVCSWSLRARPSAGVAVPLRWEELGRVTAADAFALPKALQRAQKLKKDPWEG
IDQVKQVLPAL
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atgtcattgcaggagtaccggcgcaagcgccgcttcggtgaaaccccggaacccgacgac
gagcgccggggcgccgtcgcgcgccgacccatcttcgtggtgcagctgcatcacgccagt
gcacgtcactacgatttccggttggaagccgatggcgtgctgaagagctgggccgtgccg
aagggaccgtcgctgcgcgtgggcgagaagcggctggcggtggaggtggaagaccacccg
ctgtcctacgccacgttcgagggcgatattcccgaaggccactacggcgccgggcatgtg
gatgtctacgaccacggcacgtgggcctgtgatggcgacccgctggaggcgatcgccgcc
ggcaaagtcgacctcgtgctgcatgggagccggctcaagggcggctggaagctggtgcgc
accaacatgaaagggaagcagcatcagtggctgctgatcaagcgtgatgacgaggaggcg
cgcgataccgacgcggacgcgctgctggaggaggctgtgccaccgaagcgaacgtcgacg
aagaccgtaaagaccatcaagtccaccacgaccacaaagacaagctccagccgctcttcc
aggacgaccaggacaatcaaaccggttgcacgccgcaacgccgacgctcgctgggcaaaa
cgcgcgctgtcgctggagcatgcacgcgacaagccctatccccacgacttcaaaccccag
ctcaccgatcaccgcgacactgcacccgacggcgaaacctggctgcacgagatcaagtgg
gatggctaccgcctgctggccgatgtgcgcgatggcgtggtggcgctgcgctcgcgcaac
ggcttgaactggacggaagacttcccggaagtggtgcaggccattcaggcactgccggtc
accgacctgcgcctggatggcgagctggtggtgctggatgcgcagggccgcagcgatttc
accggcctgcagaaagtgattgacggcaccgccaagcagccgctgcgctacgtggtgttc
gacatgcccggcgtggccggtgtggatatcagccgcgcgccgctgctggaacgcaagaca
ctgctgaaggacctgctgggtgacacgcccggcacactggcatacagcgaccacgtgctc
gatcacggcccggcggttttcgaggcaagcggcaaggccggcttcgaaggcatcatcagc
aagcgggtggatgcgccgtacgtcaacgcgcgctcgcccagctgggtgaaggtgaagcac
gagaacaccgatgagttcctggtggtgggatacaccgaccccaagggatcacgcagtggc
ttcggctcactgttgatggctgtgcccgaaaaaagcggcctgcgttacgtgggccgcgtg
ggtaccggcttcgatgatgccaagctggctgccatgcaccgccagctgaaggcattggat
accgacaaggccgccgtggaactgccttcgcacgtgccgttcaaggcgagcagcgtgcat
tgggtcaaacccacgttggtggccgaagttgccttccgtggctgggccaaggaagggctg
ctgcggcaggccagcttcaagcgcctgcgcgaagacaagacggccaaggagctgggtgcg
gctgccagtgcggtacctgccaaggccgcgaaggcgacgaaggcacccgcaaaggcgaaa
gcgcccgatcgcgccgccgacggcgtgaccatctcgcaccccgaacgtgtggtgttcgcc
aacgccaggctgaccaagggcgacgtcgccgactattaccggcagatggcgcgctggatc
ctgcccgaggtcgcccgccgcccgctgtcactgctgcgctgccccgatggcgtggacaag
ccgtgcttcttccagaagcaccacggcaccggcctgggcgacgcggtggaagccatcccg
ctggagcagaagagcggccgcgaggactacctctatatcgaagacaccgaaggcctgctg
cagctggtgcagatgaacaccctggaactgcacccgtggggcgccagcgtggacgacccc
gagcatccggaccggttggtgttcgacctggatcccggtgagggcgtgacctgggcggcg
atcaaggccgcagcacgcgatgtgcgcgaccgcctgcaggagatcgggttggaaagcttc
gtacgcctgtccggcggcaagggcgtgcacgtggtggtgccactcacgcccaaggcggat
tgggcgcaggccaaggatttctgcgagtcgttcgcccaggcgatggccgagcacgcaccg
gatcgctacgtggccacgatgagcaaggccaagcgcaccggcgtgatcttcattgattgg
ctgcgcaatgcgcgcggcgccacaagcgtgtgttcgtggtcgctgcgtgccaggccatca
gccggcgtggcagtgccgctgcgctgggaagagctgggacgtgtcaccgccgccgatgcg
tttgcgttgcccaaggcgctgcagcgtgcgcagaagctgaagaaagatccctgggaaggg
atcgatcaggtcaagcaggtgttgcctgcgctgtga
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