Stenotrophomonas rhizophila: BAY15_1323
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Entry
BAY15_1323 CDS
T04500
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
srh
Stenotrophomonas rhizophila
Pathway
srh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
srh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BAY15_1323
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srh03400
]
BAY15_1323
Enzymes [BR:
srh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BAY15_1323
DNA repair and recombination proteins [BR:
srh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BAY15_1323
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_30
RecG_dom3_C
AAA_16
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AOA71757
UniProt:
A0A1B2N382
LinkDB
All DBs
Position
complement(1499109..1502576)
Genome browser
AA seq
1155 aa
AA seq
DB search
MSRTSTPTPPLPRSGQLRAWWRAPASPTALAWYIARAAETHDGPLLVIARDNHGANQIES
DLRTLLGAASDLPVVAFPDWETLPYDAFSPHPDIISQRLAALHQLPTLRRGIVVVPVQTL
LQQLAPLKYIIGGSFDLKVGQRLDLDAEKRRLEAAAYRNVPQVMDPGDFAVRGGLLDVFP
MGAEAPLRIELLDEDIDSIRAFDPESQRSLDKVDAVRMLPGREVPLDELSVSRVLATLRE
RFDVDTRRSALYQDLKSGLAPAGVEYYLPLFFDATATLFDYLQPNALPVIAPGVGEAAAS
FWAQTQNRYEQRRHDVERPLLAPTELYLSPEGLSARLNTLPRIEVWSADHPRIDEATPLG
DQPLPPLPVAARDAPAGEALKSFLGHYPGRVLIAADSPGRREALLEVLLSAELKPPVVAD
LPTFLADPGQRFAITVAPLEDGFALDAPPLAVLTERQLFPERAGTTRRSRRVGREPEAII
RDLGELTEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGDRLYVPVAQLHLISR
YSGASPETAPLHSLGGEQWSKAKRRAAEKVRDVAAELLEIQARRRARAGLALHVDRAMYE
PFAAGFPFEETADQLAAIDATLRDLASSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQ
VAVLVPTTLLAEQHYRNFRDRFADWPLRVEVLSRFKSTKEIKAELEKVAAGTIDVIIGTH
RLLQPDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLR
DLSIIATPPPNRLAVQTFITAWDNALLREAFQRELARGGQLYFLHNDVESIGRMQRDLAE
LVPEARIGIAHGQMPERELERVMLDFQKQRYNVLLSTTIIESGIDIPNANTIIINRADRF
GLAQLHQLRGRVGRSHHRAYAYLVVPDKRSMTPDAEKRLEAIASMDELGAGFTLATHDLE
IRGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIRLGKLPDLDSGEEVRGAEVELHVPA
LIPDDYLPDVHTRLTLYKRISSARDSGELRELQVEMIDRFGLLPDAAKHLFAVAELKLQC
NALGIRKLELGENGGRIVFEAKPSIDPMAVIQMIQKQPKLYTMDGPDKLRIKVPLPLPED
RFNAAKALLTTLTPG
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgcacctcaactcccacaccgccgctgccccgttccgggcagctccgcgcctgg
tggcgcgctcccgcctcgcccacggcgctggcgtggtacatcgcacgcgctgcggaaacc
catgacgggccgttgctggtcatcgcgcgcgacaatcacggcgccaaccagatcgagtcc
gacctgcgcaccctgctgggcgccgcgtcggacctgccggtggtggccttcccggattgg
gaaacgctgccctacgatgccttcagcccccatccggacatcatttcgcagcgcctggcc
gcactgcaccagttgccgacgctgcgccgtggcatcgtggtggtgccggtgcagaccctg
ctgcagcagctggccccgctcaagtacatcatcggcggcagtttcgacctgaaggtcggc
cagcgcctggatctggatgcggaaaagcgccggcttgaagcggccgcctaccgtaacgtg
ccgcaggtgatggacccgggcgatttcgccgtgcgcggtggcctgctcgacgtgttcccg
atgggcgcggaagcgccgttgcggatcgagctgttggatgaggacatcgattcgatccgc
gccttcgacccggaaagccagcgatcgctggacaaggtcgacgcggtgcgcatgctcccc
ggccgcgaagtgccgttggacgaactgagcgtgtcgcgggtgctggccaccctgcgcgag
cgcttcgacgtggatacccggcgcagtgcgctgtaccaggatctcaagtccgggctggca
ccggctggcgtggagtactacctgccgctgttcttcgacgcgaccgctacgctgttcgat
tacctgcagccgaacgcgctgccggtcatcgcgccgggcgtgggcgaggcggcggcttcg
ttctgggcgcagacccagaaccgctatgagcagcgccggcacgatgtggagcgcccgttg
ctggcgcccaccgagctgtacctcagcccggaaggcctgagcgcgcgtttgaacaccctg
ccgcgcatcgaagtgtggagcgccgaccacccgcgcatcgacgaagccacgccgctgggc
gaccagccgctgccgccgctgccggtggccgcgcgcgatgcgccggccggtgaagcactg
aagtcgttcctgggccactacccgggtcgggtgctgatcgccgccgattcgccgggccgc
cgcgaagcgttgctggaagtgctgctgtcggccgaactgaagccgccggtggtggccgac
ctgccgaccttcctggccgatccgggccagcgcttcgccatcacggtggcgccgctggaa
gacggcttcgcgctcgatgcaccgccgctggcggtactgaccgagcgccagctgtttccc
gagcgcgccggcaccacccggcgcagccgacgggtcgggcgcgagccggaagcgatcatc
cgcgacctgggcgagctcaccgaaggcgcgccgatcgtccatgaagaccacggcgtcggc
cgctaccgcgggctgatcgtgctcgacgccggcggcatgccgggcgagttcctggagatc
gaatacgccaagggcgaccggctgtatgtgccggtggcccagctgcacctgatcagccgc
tactccggtgcctcgccggagaccgcgccgctgcactcgctcggtggcgaacagtggagc
aaggccaagcgccgcgcggccgagaaggtccgtgacgtggccgccgaactgctggagatc
caggcccgccgccgtgcgcgcgccggcctggcgctgcacgtggaccgcgcgatgtacgag
ccgttcgcggccggcttcccgttcgaggaaaccgccgaccagctcgccgcgatcgacgcc
accctgcgcgacctcgccagcagccagccgatggaccgcgtggtctgcggcgacgtcggc
tttggcaagaccgaagtggccgtgcgcgccgcgttcgccgccgccagcgccggcaagcag
gtcgccgtgctggtgccgaccacgctgctggccgaacagcactaccgcaacttccgcgac
cgcttcgccgattggccgctccgggtggaagtgctgtcgcgcttcaagagcaccaaggag
atcaaggccgagctggaaaaggtggcggccggcaccatcgacgtcatcatcggcacccac
cgcctgctgcagccggacgtgaagttcaaggacctgggcctggtggtggtggacgaagaa
cagcgcttcggcgtacgccagaaggaagcactgaaggcgatgcgggccaacgtacacctg
ctgaccctgaccgccacgccgattccgcgcacgctcaacatggccatggccggcttgcgc
gacctgtcgatcatcgccaccccgccgccgaaccggctggcagtgcagaccttcatcacc
gcctgggacaacgcgctgctgcgcgaagcgttccagcgcgaactggcccgtggcggccag
ctgtatttcctgcacaacgacgtggaaagcatcggccgcatgcagcgcgacctggccgag
ctggtacccgaggcacgcatcggcatcgcccacgggcagatgcccgaacgcgaactcgag
cgggtgatgctggatttccagaagcaacgctacaacgtgctgctgtcgaccacgatcatc
gaatcgggcatcgacatccccaacgccaacaccatcatcatcaaccgcgccgaccggttc
ggcctggcccagctgcaccagctgcgtggccgcgtcggccgttcgcaccaccgcgcctac
gcctatctggtggtgccggacaagcgctcgatgacgcccgatgccgaaaagcgcctggaa
gccatcgcctccatggacgaacttggcgccggctttaccctggccacgcacgatcttgag
atccgcggcgccggcgaactgctgggcgaagaccagagcgggcagatggccgaggtgggc
ttcagcctgtacaccgaactgcttgagcgcgcggtgcgcagcatccggctgggcaagctg
cccgacctggattcgggcgaggaagtgcgcggtgccgaggttgagctgcacgtaccggcg
ctgatcccggacgactacctgcccgacgtgcacacccgcctgaccctgtacaagcgcatc
agcagcgcgcgtgacagtggcgagctgcgcgaactgcaggtagagatgatcgaccgcttc
gggcttctgccggacgcggccaagcacctgttcgcggtggccgagctgaagctgcagtgc
aacgcactgggcatccgcaagttggaactgggtgagaacggcggccgtatcgtgttcgag
gccaagccgtccatcgacccgatggcggtcatccagatgatccagaagcagccgaagctg
tacaccatggatggcccggacaagctgcgcatcaaggtgccgctgccgttgcccgaagac
cgcttcaacgcggccaaggcgttgttgaccacgctgacgccgggctga
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