Sphingomonas rhizophila: H9L12_09290
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Entry
H9L12_09290 CDS
T07014
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
srhi
Sphingomonas rhizophila
Pathway
srhi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
srhi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
H9L12_09290 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srhi03400
]
H9L12_09290 (ligD)
Enzymes [BR:
srhi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
H9L12_09290 (ligD)
DNA repair and recombination proteins [BR:
srhi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
H9L12_09290 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QNN64505
UniProt:
A0A7G9S9I0
LinkDB
All DBs
Position
complement(1804620..1807109)
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AA seq
829 aa
AA seq
DB search
MARKVPLDIATYNKKRDFKRTAEPKGRKIKGKGDSFVVQKHDASRLHWDFRLEMDGVLKS
WAVPKGPSLDPGTNRLAMRTEDHPLDYAEFEGTIPQGEYGGGTVMLWDRGRWIPEPGKDP
RKTIEEGHLHFALEGERMHGDWVMFRLKGKPGEKGEAWMLKKVTDDDARPDEGDALVEQC
VTSVTTGRSMAEIAAGADVWKSNRGGKKGGATKRKAGTKPPAFRKPQLATLVDAVPTGSD
WLFEYKYDGYRLLIATGDGAATAWTRNGKDWTDKFRSIAKAAADLPAGCLIDGEAVALGK
DGKPNFQLLQSTLKGGDADLAFYAFDLLVDRGEDITKLSNLERKERLAALLKTAKAPILY
GDHVLTKGEALFDAICKEGGEGIIAKKASATYRGERARNWLKVKCIQRQEFVIVGWQASD
KRRGFRSLHLAVREGRKLTYAGKVGTGFNAALIEDLSERMRPLSVDEPVLDVPRTARRCS
HWIKPRLVGEVAFTEFTDEGVLRHPSFIALRDDKPAKDVVREKAEHLPRARRSSKKAAAM
AETVGIRISNPDRVIFPGDDLTKGQLADYYAAVQAPMLVTTANRPISLIRCPQGRAKHCF
FQKHDSGSMGDDVHHVPVKESDGEVADYLYVKDAKGILACVQMGTIEFHGWGSRVDPLER
PDRLVFDLDPDEGLGFDKVKVAALRLRALLADLGLVTFPMLTGGKGIHVIAPLDGKAEWP
AVKSFAERFSRAIAEAEPDMFTANIRKAQRKGRIFLDWLRNQRGATAVMPYSARVREGAP
VAAPIDWSELEKLKAANLYSIRDADELLERAGSKLLSGWCVADQSLPDA
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcaaggtcccgctcgacatcgcaacctacaacaagaagcgcgacttcaagcgg
acggccgagcccaagggtcgaaagatcaaggggaagggcgacagcttcgtcgtccagaag
cacgacgcgtcgcggctgcactgggacttccggctggagatggacggtgtcctgaaaagc
tgggccgtacccaagggtcccagcctcgaccccggcaccaaccggctggcgatgcggacc
gaggaccatccgctcgactatgcggagttcgaaggaacgatcccgcagggcgaatatggc
ggcggcacggtcatgctgtgggaccgtggccgctggattccggaacccgggaaagacccg
cgcaaaacgatcgaggagggccatttgcacttcgcgctcgaaggggagcgcatgcatggc
gactgggtcatgttccggctgaagggcaagcccggcgaaaagggcgaagcttggatgctg
aagaaggtgacggacgacgacgcgcgtccggacgaaggcgatgccttggtcgaacaatgc
gtgaccagcgtcaccaccggtcgctcgatggcggaaattgccgccggtgccgatgtctgg
aaaagcaaccgcgggggcaagaagggcggcgccaccaagcgcaaggcggggaccaagccg
ccggcgttccggaagccccagttggcaacgcttgtggacgcggttcccacagggtccgat
tggctgttcgaatataagtatgacggataccggctgttaatcgcgaccggcgacggcgcg
gcgacggcgtggacccgtaacggcaaggactggacggacaagttccggtcgatcgcgaag
gcggctgccgaccttcccgcggggtgcctgatcgatggcgaagcggtcgcgctcggcaag
gacggcaagccgaacttccagttgctgcaatcgactctcaagggcggcgacgccgatctc
gccttctacgccttcgacctgttggtcgaccggggcgaggacattaccaagctgtccaac
ctggaacgcaaggaacggctggccgcgctgctgaagaccgcgaaggcaccgatcctttac
ggcgaccatgtcctcacgaagggcgaggcgctgttcgacgccatctgcaaggagggcggg
gaggggatcatcgccaagaaggcgagcgcgacctaccgcggcgaacgcgcccggaattgg
ctgaaggtcaaatgcatccagcgacaggaattcgtgatcgtcggttggcaggcgagcgac
aagcgccgcggcttccgttccctgcacctcgcggtgcgtgaagggcggaagctgacctac
gcggggaaggtcggcaccgggttcaatgcggcgttgatcgaggatttgtccgaacgaatg
cggccgctgtcggtcgacgaaccggttctcgacgtgccgcgaaccgcccgtcgctgctcg
cattggataaaacctcggctggtgggtgaggtcgccttcaccgaattcacggacgagggc
gtcctccgtcatcccagtttcatcgcgttgcgcgacgacaagccggccaaggatgtggtc
cgcgaaaaggccgagcacctgcccagggcaaggcgctcgtcgaagaaggcggcggcaatg
gcggaaacggtcggcatcaggatcagcaatcccgaccgggtcatcttccccggcgacgac
ctcaccaagggccagctcgccgactattatgccgcggtgcaggcgccgatgctggtcacg
accgccaaccgcccgatcagcctgatccgctgtccgcagggccgcgccaagcactgcttc
tttcagaagcatgacagcgggtcgatgggcgacgacgtccatcatgtgccggtcaaggag
agcgatggcgaggtagcggactatctctacgtcaaggacgccaagggaatcctcgcctgc
gttcagatggggacgatcgaattccacggctggggaagccgggtcgatccgctggagcgt
cccgaccggctggtgttcgatctcgatcccgacgagggacttggcttcgacaaggtgaag
gtggccgcgcttcggttgcgcgcgctgctcgccgacctcggcctcgtcaccttcccgatg
ctgaccggcggcaagggtatccacgtcatcgccccgcttgatggcaaggccgaatggccg
gcggtcaaaagcttcgccgaaaggttcagccgcgccattgccgaggccgagccggacatg
tttaccgccaacatccgcaaggcccagcggaagggacggatcttcctcgactggctgcgc
aaccagcgcggggcgacggcggtgatgccctattcggcgcgtgtccgcgaaggcgcgccg
gtggcggcgccgatcgactggagcgaactcgaaaagcttaaggccgccaatctctactcc
atccgcgacgcggacgagttgctcgaacgggcgggatcgaagctgctaagcggctggtgc
gtcgctgaccagtcgctgcccgacgcgtga
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