KEGG   Sphingomonas rhizophila: H9L12_09290
Entry
H9L12_09290       CDS       T07014                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
srhi  Sphingomonas rhizophila
Pathway
srhi03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:srhi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    H9L12_09290 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:srhi03400]
    H9L12_09290 (ligD)
Enzymes [BR:srhi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     H9L12_09290 (ligD)
DNA repair and recombination proteins [BR:srhi03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     H9L12_09290 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: QNN64505
UniProt: A0A7G9S9I0
LinkDB
Position
complement(1804620..1807109)
AA seq 829 aa
MARKVPLDIATYNKKRDFKRTAEPKGRKIKGKGDSFVVQKHDASRLHWDFRLEMDGVLKS
WAVPKGPSLDPGTNRLAMRTEDHPLDYAEFEGTIPQGEYGGGTVMLWDRGRWIPEPGKDP
RKTIEEGHLHFALEGERMHGDWVMFRLKGKPGEKGEAWMLKKVTDDDARPDEGDALVEQC
VTSVTTGRSMAEIAAGADVWKSNRGGKKGGATKRKAGTKPPAFRKPQLATLVDAVPTGSD
WLFEYKYDGYRLLIATGDGAATAWTRNGKDWTDKFRSIAKAAADLPAGCLIDGEAVALGK
DGKPNFQLLQSTLKGGDADLAFYAFDLLVDRGEDITKLSNLERKERLAALLKTAKAPILY
GDHVLTKGEALFDAICKEGGEGIIAKKASATYRGERARNWLKVKCIQRQEFVIVGWQASD
KRRGFRSLHLAVREGRKLTYAGKVGTGFNAALIEDLSERMRPLSVDEPVLDVPRTARRCS
HWIKPRLVGEVAFTEFTDEGVLRHPSFIALRDDKPAKDVVREKAEHLPRARRSSKKAAAM
AETVGIRISNPDRVIFPGDDLTKGQLADYYAAVQAPMLVTTANRPISLIRCPQGRAKHCF
FQKHDSGSMGDDVHHVPVKESDGEVADYLYVKDAKGILACVQMGTIEFHGWGSRVDPLER
PDRLVFDLDPDEGLGFDKVKVAALRLRALLADLGLVTFPMLTGGKGIHVIAPLDGKAEWP
AVKSFAERFSRAIAEAEPDMFTANIRKAQRKGRIFLDWLRNQRGATAVMPYSARVREGAP
VAAPIDWSELEKLKAANLYSIRDADELLERAGSKLLSGWCVADQSLPDA
NT seq 2490 nt   +upstreamnt  +downstreamnt
atggcgcgcaaggtcccgctcgacatcgcaacctacaacaagaagcgcgacttcaagcgg
acggccgagcccaagggtcgaaagatcaaggggaagggcgacagcttcgtcgtccagaag
cacgacgcgtcgcggctgcactgggacttccggctggagatggacggtgtcctgaaaagc
tgggccgtacccaagggtcccagcctcgaccccggcaccaaccggctggcgatgcggacc
gaggaccatccgctcgactatgcggagttcgaaggaacgatcccgcagggcgaatatggc
ggcggcacggtcatgctgtgggaccgtggccgctggattccggaacccgggaaagacccg
cgcaaaacgatcgaggagggccatttgcacttcgcgctcgaaggggagcgcatgcatggc
gactgggtcatgttccggctgaagggcaagcccggcgaaaagggcgaagcttggatgctg
aagaaggtgacggacgacgacgcgcgtccggacgaaggcgatgccttggtcgaacaatgc
gtgaccagcgtcaccaccggtcgctcgatggcggaaattgccgccggtgccgatgtctgg
aaaagcaaccgcgggggcaagaagggcggcgccaccaagcgcaaggcggggaccaagccg
ccggcgttccggaagccccagttggcaacgcttgtggacgcggttcccacagggtccgat
tggctgttcgaatataagtatgacggataccggctgttaatcgcgaccggcgacggcgcg
gcgacggcgtggacccgtaacggcaaggactggacggacaagttccggtcgatcgcgaag
gcggctgccgaccttcccgcggggtgcctgatcgatggcgaagcggtcgcgctcggcaag
gacggcaagccgaacttccagttgctgcaatcgactctcaagggcggcgacgccgatctc
gccttctacgccttcgacctgttggtcgaccggggcgaggacattaccaagctgtccaac
ctggaacgcaaggaacggctggccgcgctgctgaagaccgcgaaggcaccgatcctttac
ggcgaccatgtcctcacgaagggcgaggcgctgttcgacgccatctgcaaggagggcggg
gaggggatcatcgccaagaaggcgagcgcgacctaccgcggcgaacgcgcccggaattgg
ctgaaggtcaaatgcatccagcgacaggaattcgtgatcgtcggttggcaggcgagcgac
aagcgccgcggcttccgttccctgcacctcgcggtgcgtgaagggcggaagctgacctac
gcggggaaggtcggcaccgggttcaatgcggcgttgatcgaggatttgtccgaacgaatg
cggccgctgtcggtcgacgaaccggttctcgacgtgccgcgaaccgcccgtcgctgctcg
cattggataaaacctcggctggtgggtgaggtcgccttcaccgaattcacggacgagggc
gtcctccgtcatcccagtttcatcgcgttgcgcgacgacaagccggccaaggatgtggtc
cgcgaaaaggccgagcacctgcccagggcaaggcgctcgtcgaagaaggcggcggcaatg
gcggaaacggtcggcatcaggatcagcaatcccgaccgggtcatcttccccggcgacgac
ctcaccaagggccagctcgccgactattatgccgcggtgcaggcgccgatgctggtcacg
accgccaaccgcccgatcagcctgatccgctgtccgcagggccgcgccaagcactgcttc
tttcagaagcatgacagcgggtcgatgggcgacgacgtccatcatgtgccggtcaaggag
agcgatggcgaggtagcggactatctctacgtcaaggacgccaagggaatcctcgcctgc
gttcagatggggacgatcgaattccacggctggggaagccgggtcgatccgctggagcgt
cccgaccggctggtgttcgatctcgatcccgacgagggacttggcttcgacaaggtgaag
gtggccgcgcttcggttgcgcgcgctgctcgccgacctcggcctcgtcaccttcccgatg
ctgaccggcggcaagggtatccacgtcatcgccccgcttgatggcaaggccgaatggccg
gcggtcaaaagcttcgccgaaaggttcagccgcgccattgccgaggccgagccggacatg
tttaccgccaacatccgcaaggcccagcggaagggacggatcttcctcgactggctgcgc
aaccagcgcggggcgacggcggtgatgccctattcggcgcgtgtccgcgaaggcgcgccg
gtggcggcgccgatcgactggagcgaactcgaaaagcttaaggccgccaatctctactcc
atccgcgacgcggacgagttgctcgaacgggcgggatcgaagctgctaagcggctggtgc
gtcgctgaccagtcgctgcccgacgcgtga

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