Shewanella rhizosphaerae: K0I63_16195
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Entry
K0I63_16195 CDS
T09262
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
srhs
Shewanella rhizosphaerae
Brite
KEGG Orthology (KO) [BR:
srhs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
srhs03016
]
K0I63_16195 (thpR)
Enzymes [BR:
srhs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
K0I63_16195 (thpR)
Transfer RNA biogenesis [BR:
srhs03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
K0I63_16195 (thpR)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
HVSL
Motif
Other DBs
NCBI-ProteinID:
QYK12265
LinkDB
All DBs
Position
3728179..3728709
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AA seq
176 aa
AA seq
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MKRLFLAIAPDAAQLEQLTQLQASLDGEGRLVPRDNLHMTLAFLGQCSEAQQEALSESLA
RLAHQRRLPAFEVTLNTLDHWVKPKIICLKGAARDPGLVSLFNQCQRLAQQLGLHTSEHS
FTPHITLMRKAKMLPALKAPSLTLSGHALHLYHSQSSEQGVQYKVLASWPLTAPKA
NT seq
531 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgactctttctcgccatcgcccccgatgcggcgcagctggagcaactgacccag
ttacaggcgagcttagacggtgagggacgcctagtccccagagacaatctgcacatgacg
ctggcctttctcggccagtgcagcgaggcccagcaggaggcgctgagcgagtccctcgcc
cggctcgcccatcaacgccgtttaccggcatttgaggtgacactcaacaccctagaccac
tgggttaaaccaaaaattatctgcctcaagggcgcggcgcgggatcccgggcttgtcagc
ctgttcaaccaatgccaacgtctggcccagcagctcgggttacacaccagcgagcacagc
ttcacgccccacatcaccttgatgcgtaaggccaagatgctgcccgcactcaaggcgccc
agcctcaccctcagcggccatgccctgcatctgtatcactctcagagtagcgagcagggg
gtgcaatataaggtattggcctcctggccgctcactgccccaaaagcataa
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