Streptomyces rimosus: CP984_20280
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Entry
CP984_20280 CDS
T07052
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
srim
Streptomyces rimosus
Pathway
srim03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
srim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CP984_20280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srim03400
]
CP984_20280
Enzymes [BR:
srim01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CP984_20280
DNA repair and recombination proteins [BR:
srim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CP984_20280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QEV77035
LinkDB
All DBs
Position
complement(4762022..4762957)
Genome browser
AA seq
311 aa
AA seq
DB search
MSGKSGGADDTRTIKAGRRTVTVSRPGKVLFPDDGITKGDLADHYKAVARRAVPHLRDRP
LMMERHPDGIGGKPLMQKNAPDYFPEWVRRSEQSKEGGTVTHVVCDDPATLVYLADQASV
TVHRWLSREHRPDHPDLLIFDLDPAEGADFEDVRWAAHRVCELWDELKLPARLMTTGSRG
LHVIAPLDAGSDFDSVRDFAHLAAGLLARRHPDRLTTEQRKAERKGRVYLDVQRNAYAQT
AVAPYSVRAKPGAPVATPITRDELDDPDLTAQRWTVATIPDRLSASDPWSGLSWRGRSVR
AARERLEDLKE
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcaagagcggcggcgcggacgacacacgcaccatcaaggcggggcggcgcacg
gtcacggtcagccggcccggcaaggtcctcttcccggacgacgggatcaccaagggcgac
ctggccgaccactacaaggcggtcgcccggcgtgcggtcccccatctgcgcgaccgtccg
ctgatgatggaacggcaccccgacggcatcggcggcaagcccctgatgcagaagaacgcg
cccgattactttcccgaatgggtacggcgttccgagcagtccaaggagggcggcacggtc
acccacgtcgtgtgcgacgacccggcgaccctcgtctacctcgccgaccaggccagcgtc
accgtccaccgctggctctcccgcgaacaccggcccgaccaccccgacctgctgatcttc
gacctcgacccggccgagggcgcggacttcgaggacgtacggtgggccgcccaccgcgtc
tgcgagctgtgggacgagctgaaactgcccgcccgcctgatgacgaccggctcgcgcggc
ctgcacgtcatcgccccgctggacgccggctccgacttcgactccgtacgcgacttcgcc
catctcgccgccggactcctcgcccggcgccacccggaccggctcaccaccgaacagcgc
aaggccgagcgcaagggccgcgtctacctggacgtccagcgcaacgcgtacgcgcagacg
gcggtggcgccctattccgtacgggcgaagccgggcgcgccggtggccaccccgatcacc
cgcgacgaactggacgacccggacctgacggcccagcggtggaccgtggccaccatcccc
gaccgcctttccgcatccgacccgtggtcggggctgtcgtggcgcgggcggtcggtacgg
gccgcgcgggagcggctggaggacctcaaggagtag
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