Streptomyces rectiverticillatus: FGW37_12975
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Entry
FGW37_12975 CDS
T06927
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
srk
Streptomyces rectiverticillatus
Pathway
srk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
srk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FGW37_12975 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srk03400
]
FGW37_12975 (mfd)
Enzymes [BR:
srk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FGW37_12975 (mfd)
DNA repair and recombination proteins [BR:
srk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FGW37_12975 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
MFD_D3
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QLE72390
LinkDB
All DBs
Position
complement(2990023..2993556)
Genome browser
AA seq
1177 aa
AA seq
DB search
MSLHGLLDAVVYDPALAEAVKAAADGNRPHVDLVGPPAARSFAVAALARDTGRPVLAVTA
TGREAEDLAAALRSLLPPDGVVEFPAWETLPHERLSPRSDTVGRRLAVLRRLAHPSKDDP
AAGPVSVVVAPVRSVLQPQVKGLGELEPVSLRSGRSADLEKVVDALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDEVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTADVRERAAALAEEHPELGELLSKIAEGIAVEGMESLAPVLVDEMELLLDVLPAGAMTV
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVNAASLWGIADVRDRARELGQM
WWSVSPFAADEEPDGDTLKLGMHAPETYRGDTARALADTKGWLADGWRTVFVTEGHGPAA
RTVEVLGGEGIPARLDADVAELSPSVVHVSCGSIDNGFVDPGLKIAVLTETDLSGQKSAS
KDMGRMPARRRKTIDPLTLQAGDYIVHEQHGVGRYIEMVQRTVQGATREYLLVEYAPAKR
GQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHSFGTDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVVTRALSRFQTDSEAKA
VLEGLRDGSVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYDQKQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLREIIPEARIRTAHGQMGESQLEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRSRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYIRMVGEAVADYRASLEGGE
EQPEAPPEVKVELPVDAHVPHDYAPGERLRLQAYRAIASANSEEDIRAVREELTDRYGKL
PEPVENLLLVAGLRMLARACGVSDITLQGSNVRFGPVELRESQELRLKRLYPRTVMKPAT
KQILVPRPATRQIGGKPLVGRELLAWTGEFLTTILGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtcttctcgacgccgtcgtctacgatccggcgctcgccgaagcggtg
aaggccgcggccgacggcaaccgcccgcacgtcgacctcgtcggcccgcccgccgcccgg
tccttcgccgtcgccgcgctcgcccgtgacaccgggcgcccggtgctggccgtgacggcc
acgggccgcgaggcggaggatctggcggcggcgctgcgctcgctgctgccgccggacggc
gtcgtggagttcccggcctgggagacgttgccgcacgagcgcctctcgccccgctcggac
acggtcggccgccgcctggccgtgctgcgccggctcgcgcaccccagcaaggacgacccg
gcggcgggaccggtcagcgtggtcgtcgcgccggtccggtccgtgctgcagccgcaggtg
aagggcctcggggagctggagccggtcagcctgcgcagcgggcggagcgccgatctcgaa
aaggtcgtggacgcgctcgcggccgccgcctacgcccgcgtcgaactggtggagaagcgc
ggcgagttcgccgtccgcggcggcatcctcgacgtcttcccgccgaccgaggagcacccg
ctccgcgtcgagttctggggcgacgaggtcgaggagatccgctacttcaaggtggccgac
cagcgttccctggaggtcgccgagcacggcctgtgggcgccgccgtgccgcgagctgctg
ctgaccgcggacgtacgggaacgggcggcggccctggcggaggagcacccggagctcggc
gagctcctctccaagatcgccgagggtatcgcggtggagggcatggagtccctcgccccg
gtcctggtggacgagatggagctgctgctggacgtgctcccggccggcgcgatgacggtc
gtgtgcgacccggagcgcgtgcgcacccgcgccgcggacctcgtcgccaccagccaggag
ttcctgcaggcgtcctgggcggccacggccggcggcggggaggcccccatcgacgtgaac
gccgcctccctgtggggcatcgcggacgtccgcgaccgcgcccgcgagctcggccagatg
tggtggtcggtgagccccttcgcggcggacgaggagccggacggcgacaccctcaagctc
ggcatgcacgccccggagacctaccgcggcgacaccgcccgcgccctggccgacaccaag
ggctggctggccgacggctggcgtaccgtcttcgtgacggagggccacggcccggcggcc
cgtacggtcgaggtgctgggcggcgagggcatccccgcccgcctggacgccgatgtcgcc
gagctgtccccgtcggtggtccacgtctcctgcggcagcatcgacaacggtttcgtcgac
cccggcctgaagatcgccgtcctcaccgagacggacctgtccgggcagaagtccgcgagc
aaggacatgggccgcatgccggcccgccgccgcaagacgatcgacccgctgaccctgcag
gccggcgactacatcgtccacgagcagcacggcgtcggccgctacatcgagatggtgcag
cgcaccgtccagggcgccacccgcgagtacctcctcgtggagtacgcgcccgccaagcgc
ggccagcccggcgaccgcctttacatccccaccgaccagctggagcaggtcaccaagtac
gtgggcggcgaggccccgaccctgcaccgcctcggcggcgcggactggacgaagaccaag
gcgcgcgccaagaaggccgtcaaggagatcgccgccgacctgatcaagctctactccgcg
cgcatggccgcccccggccactccttcggcaccgacaccccctggcagcgggagctggag
gacgccttcccctacgcggagacgcccgaccagctcaccaccatcgccgaggtcaaggag
gacatggagaagtccgtccccatggaccgcctgatctgcggcgacgtcggctacggcaag
acggagatcgcggtccgcgccgccttcaaggcggtgcaggacggcaagcaggtggcggtg
ctcgtgccgaccacgctgctggtgcagcagcacttcggcacgttctccgagcgctactcc
cagttcccggtggtcaccagggccctgtcccgcttccagacggacagcgaggccaaggcc
gtcctggagggcctgcgcgacggctcggtcgacatcgtcatcggcacgcaccgcctcttc
tcgtccgagacgaagttcaaggacctgggcctcgtcatcgtcgacgaggagcagcgcttc
ggcgtcgagcacaaggagcagctgaagaagctgcgggccaacgtcgacgtcctgacgatg
tccgccacgcccattccgcgcacgctggagatggcggtcaccggcatccgcgagatgtcg
accatcaccaccccgccggaggagcgccacccggtgctgaccttcgtcgggccgtacgac
cagaagcagatcggtgccgcgatccgccgcgagctgctgcgcgagggccaggtcttctac
atccacaaccgggtcgagtccatcgaccgggcggctgcgcggctgcgcgagatcatcccc
gaggcgcggatccgcaccgcgcacgggcagatgggcgagagccagctggagcaggtcgtc
gtcgatttctgggagaagaagttcgacgtgctggtctccacgacgatcgtggaatccggc
atcgacatctccaacgccaacacgctgatcgtcgagcgcggcgacaacttcggcctgtcg
cagctgcaccagctgcgcggacgcgtcggccgcagccgcgagcgcggctacgcctacttc
ctctacccgccggagaagcccctgacggagaccgcccacgagcggctcgccaccatcgcc
cagcacaccgagatgggcgccggcatgtacgtggcgatgaaggacctggagatccgcggc
gcgggcaacctgctcggcggcgagcagtccggccacatcgcgggcgtcggcttcgacctc
tacatccgtatggtcggcgaggccgtcgccgactaccgggcctccctggagggcggcgag
gagcagcccgaggcgccgccggaggtgaaggtcgagctgcccgtcgacgcccacgtcccg
cacgactacgcaccgggcgagcgcctgcgcctgcaggcctaccgcgcgatcgcctccgcg
aacagcgaggaggacatccgcgccgtccgcgaggagctcaccgaccgctacggcaagctg
cccgagcccgtggagaacctgctgctggtggcgggcctgcggatgctcgcccgcgcctgc
ggcgtctccgacatcaccctgcagggctccaacgtgcgcttcggccccgtggagctgcgc
gagtcccaggagctgcgcctgaagcgcctctacccgcgcacggtcatgaagccggccacg
aagcagatcctcgtcccccggccggcgacgcgccagatcggcggcaagccgctggtggga
cgggaactgctggcgtggacgggcgagttcctgaccacgatcctgggctcgtag
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