Salinibacter ruber M8: SRM_02018
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Entry
SRM_02018 CDS
T01209
Symbol
RecB
Name
(GenBank) ATP-dependent exoDNAse
Organism
srm
Salinibacter ruber M8
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
DEAD
Herpes_ori_bp
Motif
Other DBs
NCBI-ProteinID:
CBH24939
UniProt:
D5HA84
LinkDB
All DBs
Position
complement(2310300..2313725)
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AA seq
1141 aa
AA seq
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MSAPHSASSTYDDAAVRRRIGPWQEDDVPTLSAFEPDTNFFVRAAAGSGKTTALVARMVA
LVRSGVPVEDLTAITFTRKAAGEMSKRFYEELRRAQTALPAEGPQRRRVTAALRDAQQAF
IGTIHAFCARLLRERPIAADLPPGFVAGLEDREERELRDRAWQDYLQTVRADRPARMEAL
TSLGLEPEDLDAYFERLCEHPELDPYVNAPDTVPDLTQAAAAVRAELDAWQARCPDALPE
GRDDAMQAFDRAERLIAQTGVETPAQRAELLELFAGVADEESADVTLKCWRGPHTDAYDW
ARTLRDEHLPALVRDVVQPALRRWRAYVHEEVVAFVRPAVERFASLRQAEGRLTFHDLLA
CTRDLLRDHPGLRTTIQERHPRLLVDEFQDTDPLQAELLFYLTSRNPTETTWTDCRPLPG
SLFIVGDDKQSIYRFRRADMEVFEAVGERIEDTGGEAVMLTKNFRSLDVICDWCDAAFGA
LFDDADLMDRQATYTPFDPQRTTERDVDGVRRINLDKVRGNWGTDIAAQDAGRIARFIQG
ARDGGRSGRGADRHGALFAGGADYSDFLILTRTKSRLSVYAEALAERGIPYTVTGSEDLG
EAAELKALVDLLTCALRPDDEVACVAYLKGPLVGASDDDLYRFSRAGGEFGRMHEPVPAS
VLEALPHETAQRFEEAFGHLRAARRRLHEQRPGVAIEQLIDDLGLLAGAAHPPDAAEGSL
RAGRVLRTITYVQDLAAQGLGWAEVLDELQRVVDGEEEVDGMTLETGGDDAVRVMNVHQA
KGLEAPVVFLADPYSRSGGPSVRRHLRREAGELVAPIVQGSGYRERVTHPPLGWERPVDG
RDESFRESEERHEAAEERRLLYVAATRAQNLLVVSTYPEKPDDGPWAPLYPHLDAADVPE
LGRPDAEPSSDRPEAPAPALTDQRAGRDAQLEAQSRPSYRTESVTDGDRASPVRSSLASE
GYGEAFGSAIHQLLEQCVRTGRPTPWTDESVAASVLERTGAPNTPDAVERATTMVQRFLD
SRVWARVQAADRVYAEYPIAHAVRRETPVVRRGVIDLAWRADGRWTLVDHKTDRVQGRPP
ETLSPDHAYVQQLQAYARAWTAVVNEPVAEVGLWLADAGTHLFGEPTGEEQSLSLGRRAA
D
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccccccactcggcctcctcaacgtacgacgacgccgccgtccgccggcggatt
ggtccgtggcaggaagacgacgtgccgaccctttcggccttcgaaccggacacgaacttc
ttcgtccgggcggcggccggctccggcaaaacgacggccctcgtggcccgcatggtggcc
ctcgtgcgctcgggggtgccggtggaggaccttacggccatcacctttacccggaaggcg
gccggggagatgagcaaacggttctacgaggagctccggcgcgcccagaccgcactgccg
gcggaaggcccgcagcgacgacgggtcacggccgccctccgggatgcgcagcaggccttc
atcggcaccatccacgccttctgcgcgcgcctcctgcgggagcggccgatcgccgcagac
ctgccgcccggcttcgtcgcgggcctggaggaccgcgaggaacgggagctccgtgaccgc
gcctggcaggactacctccagaccgtacgggccgaccggccggcccgcatggaggcgctc
acgagcctgggcctggagccggaggacctggacgcctactttgaacggctgtgcgaacac
cccgagctggacccgtacgtcaacgccccggacaccgtccccgacctgacgcaggccgcg
gcggcggtgcgggccgagctcgacgcgtggcaggcccgctgtccggatgcgctgcccgaa
ggccgcgacgacgcaatgcaggcgttcgacagggcggagagactgattgcgcagacaggg
gtggagaccccggcacagcgcgccgagctccttgagctgttcgccggcgtggccgacgag
gagtcggcggacgtgacgctaaagtgctggcgcggcccgcacacggacgcctacgactgg
gcgcggaccctgcgagacgagcacctgcccgcgctggtgcgcgacgtggtgcagccggcc
ctgcgccggtggcgggcctacgtccacgaggaggtcgtggcgttcgtccgcccggccgtg
gagcggttcgcgtctctccgtcaggcggaggggcggcttacctttcacgacctgctcgcc
tgcacccgggacctgctgcgcgaccaccccggcctccgaacgaccattcaggagcgccac
ccccgcctgctggtcgacgagtttcaggacaccgatccgctgcaggcggagctgctcttc
tacctcaccagccgcaatccgaccgagacgacctggaccgactgccgcccgcttccgggc
agcttgttcatcgtcggggacgacaagcagtccatctaccgattccggcgggcggacatg
gaggtgttcgaggccgtcggcgagcgcatcgaagacacggggggcgaggccgtgatgctg
accaagaacttccgctcgctcgacgtcatctgtgactggtgcgacgcggcattcggggct
ctcttcgacgacgcggacctgatggaccgtcaggccacgtacaccccgttcgatccccag
cgcacgacagagcgggacgtggacggggtgcggcggatcaacctcgacaaggtgcggggg
aactggggaaccgacatcgccgcacaggacgccgggcgcattgcccgtttcattcaaggc
gctcgggacggcgggcgcagcgggaggggggcggaccggcacggcgcgctcttcgccggt
ggggcggactattccgacttcctcattctgacgcggaccaagtcgcgcctttccgtctac
gccgaggccctggccgagcgcggcatcccgtacaccgtcaccgggagtgaagacctgggc
gaggcggccgagctgaaagccctcgtggacctgctcacctgcgccctccgaccggacgac
gaggtggcgtgtgtggcgtacctgaaagggcccctcgtgggggcgagcgacgatgacctg
taccggttttcgcgggccggtggcgagtttggtcgcatgcacgagccggtgccggcgtct
gtgctggaggcccttccgcacgagacggcgcaacggttcgaagaggccttcggacacctg
cgtgcggcgcggcgccggctccacgagcagcgtccgggcgtcgcgatcgaacaactcatt
gacgacctgggactgctcgcgggggccgcccacccgccggacgcggccgaggggtcgctc
cgggccgggcgcgtgctccgcacgatcacctacgtgcaggatcttgccgcccagggactc
gggtgggccgaggtgctggacgagctgcagcgggtggtcgacggggaggaagaggtggac
ggcatgaccctggagacgggcggcgacgatgcggtgcgcgtgatgaacgtgcaccaggcc
aaggggctggaggcgccggtcgtattcctggccgatccgtacagccggagcggcgggccg
tcggtgcggcgtcacctccgccgggaggccggtgagctcgtcgccccaatcgtgcaggga
agcggctaccgcgaacgggtgacgcacccgccgctggggtgggagaggcccgtagacggg
cgggacgagagcttccgcgagagcgaagagcgccacgaggcggccgaggagcggcgcctc
ctgtacgtggcggccacccgggcacagaatctattggtcgtgtcgacctacccggaaaaa
ccggacgacggcccctgggcgcccctctacccgcatctggacgcggcggacgttcccgaa
ctggggcgcccggacgcggagccctccagcgaccggccggaggcgcccgcccctgccctg
acggatcagcgcgccgggcgagacgctcagcttgaggcgcagtcccgtccctcgtaccgg
acggagtccgtcaccgacggcgaccgcgcctcccccgtgcgctcgtctctggcgtcggag
ggctacggagaggcgtttggctcagcaatccaccagctcctggagcagtgcgtccgcacg
ggccgccccaccccgtggaccgacgagtcggtggcggcgtccgttctcgaacggacgggg
gcgccgaacacgcccgacgccgttgagcgggccacgacgatggtgcagcggtttttggac
agccgtgtgtgggcgcgggtgcaggccgccgatcgtgtgtacgccgagtacccgatcgcc
cacgctgttcggcgcgagacccccgtggtacgtcggggggtgatcgacctggcctggcgg
gcggacggccgctggacgctcgtcgaccacaagaccgatcgtgttcaggggcgcccgccg
gagacgctgtcccccgaccatgcctatgtccaacagctccaagcgtacgcgcgggcctgg
accgccgtggtcaacgagcccgtcgcggaggtgggcctctggcttgcggacgccgggacg
cacctgttcggagaacccacgggggaagagcaatccctgtccctgggccgtcgcgctgcg
gactga
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