Salinibacter ruber M8: SRM_02461
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Entry
SRM_02461 CDS
T01209
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
srm
Salinibacter ruber M8
Pathway
srm03410
Base excision repair
srm03430
Mismatch repair
srm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
srm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SRM_02461 (recJ)
03430 Mismatch repair
SRM_02461 (recJ)
03440 Homologous recombination
SRM_02461 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srm03400
]
SRM_02461 (recJ)
DNA repair and recombination proteins [BR:
srm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SRM_02461 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SRM_02461 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SRM_02461 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
CBH25382
UniProt:
D5HBH7
LinkDB
All DBs
Position
complement(2844887..2846767)
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AA seq
626 aa
AA seq
DB search
MSPFLHVRLFFKRNQSVALQRGLWCVLYIPTPLRVLFGHFSLLLMTYRWTPRALDEPDVV
PRLQRELNDLPAPLARALALREVTTLEEAKHFFRADRSALHDPFGMAGMDAAAARLSDAI
DDGTSVLVYGDYDVDGTTGTALFTDFLRDRGVDVSFFIPDRYEDGYGLCRRGLDAAAERG
ASLVVALDCGITAHEEAAYAQELGLDLIIADHHTPKETLPEALAVLDPKRPDDDYPFEEL
PGCGLAFKLVQAVLAHRDEAPDAAYEYLDLLALSTASDIVPLYGENRVLMAEGLEALQRS
TRPGVQALADAADLDLQTVTSTGNIVFTLGPRINAAGRMEHASSAVELLLARSYEEAEPH
AAELEQLNRERRRIDDTIEEEAVERAERQITSRSPHALVLYDPDWHLGVIGIVASSIVER
FHKPTILLTHNGEAVKGSARSIEGINIYEALADCEDVLTQFGGHDHAAGMSLEADDIDAF
RDRFDDAVGERVTPELLTPSIKVDASVDLDTIGSVADRFWAVLKQFGPFGPANPTPVFHA
EDLDVVSARTVGSDDSHLKFEVRQRDASSGQTYDAIGFGMGEKLSVLRESQDTGTPVELL
FSLEENTWNGRTTLQLKARDVRLDEA
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgtcaccatttctccatgtccgcttgttttttaagaggaatcagtccgtcgcgttacaa
cgggggctctggtgtgtcttatatattccaaccccgttacgcgtcttgttcggccacttt
agcctgttgttgatgacctaccgatggaccccgcgtgccctcgacgagcccgacgtggtg
cctcgtctgcagcgcgagctcaacgacctgcccgcgcccctcgcccgtgccctcgccctg
cgcgaggtcacaacccttgaggaagcgaagcacttcttccgggccgaccgctcggccctg
cacgacccgtttgggatggcggggatggatgcggcggcggcccgcctgtccgatgccatc
gacgatgggacgtccgtgctggtgtacggcgactatgacgtggacgggacgacgggcacg
gcgctcttcacggactttcttcgcgaccggggcgtggacgtgtcgttctttatcccggac
cgctacgaggacgggtacgggctctgccggcggggcctcgacgcggcggccgagcgcggg
gcctcgctggtcgtggccctcgactgtggcatcacggcccacgaggaggcggcctacgcg
caggagctggggctcgacctcatcattgcggaccaccacacgccgaaggagacgctgccg
gaggcattggccgtgcttgatccgaagcgcccggacgacgactacccgttcgaggagctg
cccggatgcgggctggccttcaagctcgtccaggcggtcctcgcgcaccgcgacgaggcc
cccgacgcggcctacgagtacctcgaccttctggccctctctacggcgagcgacatcgtt
ccgctctacggcgaaaaccgggtcctgatggccgaggggctggaggccctgcagcggagc
acgcgcccgggcgttcaggccctggcggatgccgccgacctcgatctgcagaccgtcacc
tccaccggcaacatcgtcttcaccctcggcccccgcatcaacgccgcggggcgcatggag
cacgcctcctcggcggtcgagctgctcctcgcccggagctacgaggaggccgagccccac
gccgctgagctggaacagctgaaccgcgagcggcgccgcatcgacgacaccatcgaggag
gaggcggtcgaacgggcggagcgccagatcacgtctcgcagcccgcacgcgctggtgctg
tacgacccggactggcacctcggtgtgatcggcattgtggccagcagcatcgtcgagcgc
ttccacaagccgaccattctgctcacccacaacggggaggcggtcaagggctcggcccgc
tccatcgagggcatcaacatctacgaggccctcgcggactgcgaggacgtgctcacgcag
tttgggggacacgaccacgcggccggcatgtcgctggaggccgacgacatcgacgccttc
cgcgatcgcttcgacgacgccgtgggcgagcgggtgacgccggagctgctcaccccgtcg
atcaaggtggacgcgtcggtcgacctcgatacgatcggatcggtcgcggaccgcttctgg
gcggtgctcaagcagttcggcccgttcgggcccgccaacccgacgcccgtctttcacgcc
gaggacctggacgtggtctcggcccgcacggtggggagcgacgattcgcaccttaagttt
gaggtgcggcagcgggatgcctcaagcggtcagacgtacgacgcaatcgggttcgggatg
ggcgagaagctgtcggtgctccgggagagccaggacaccgggacgcccgtggagctgctc
ttttctttggaggagaacacctggaacgggcgcacgaccctgcaactgaaggcccgggac
gtgcgcctggacgaggcgtga
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