Salinibacter ruber M8: SRM_02476
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Entry
SRM_02476 CDS
T01209
Symbol
rpoE
Name
(GenBank) RNA polymerase sigma-E factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
srm
Salinibacter ruber M8
Pathway
srm02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
srm00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SRM_02476 (rpoE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srm03021
]
SRM_02476 (rpoE)
Transcription machinery [BR:
srm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SRM_02476 (rpoE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r4
Sigma70_r2
Sigma70_ECF
GerE
UPF0122
HTH_23
HTH_38
HTH_10
HTH_40
HTH_11
HTH_24
HTH_20
HTH_Crp_2
HTH_29
HTH_3
HTH_Tnp_ISL3
HTH_7
DUF134
DUF4719
Motif
Other DBs
NCBI-ProteinID:
CBH25397
UniProt:
D5HBJ2
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All DBs
Position
2866445..2867095
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AA seq
216 aa
AA seq
DB search
MTMSPSSSEDSTPRPGAAPRAGASPPEDDELSFDVLRNRLGTGDEAAFERIFRRLSEPVF
RFVCGMVQDEALAHDITQDTFAKLWSIRDRMDTVDSLRAYVFQMARNRVYNHQRDEAVRR
DHEQDVRDAHPDASPPAPDETLDADLLRSLLERWIAELPDRQREALTLRRQKDLSHDEIA
EIMDVSPNTVNNHIVRAMRTLRERLGEYRPDVRSEP
NT seq
651 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgtccccctcctcgtctgaggattcgacgccccggcccggcgctgcgccgcgg
gcgggtgcttcgcccccggaagacgacgagctctccttcgacgtcttgcggaaccgcctt
gggacgggcgacgaggcggccttcgaacgcatttttcggcggctctccgaaccggtcttt
cgcttcgtgtgcggcatggtgcaggatgaggctctcgcccacgacatcacgcaggataca
tttgcgaagctctggtcgattcgcgaccggatggacacggtcgactcgcttcgggcctac
gtgtttcagatggcccgaaatcgcgtgtacaaccatcagcgcgacgaggcggtacgccgc
gatcatgagcaggacgtgcgggacgcccatcccgatgcctccccgcccgctccggacgag
accctcgacgccgatctgcttcggtccctgctcgaacgatggatcgcggaactgcccgac
cggcagcgcgaggcattgacgctgcgccggcagaaggacctcagtcacgacgagatcgcc
gagatcatggacgtgtcgccgaacacggtcaacaatcacatcgtccgggccatgcgtacc
ctgcgcgagcgtcttggtgaataccgtccagatgtacggtccgagccgtga
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