Spiribacter roseus: BBH56_04040
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Entry
BBH56_04040 CDS
T06143
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sros
Spiribacter roseus
Pathway
sros03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sros00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BBH56_04040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sros03400
]
BBH56_04040
Enzymes [BR:
sros01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BBH56_04040
DNA repair and recombination proteins [BR:
sros03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BBH56_04040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
MFD_D3
ResIII
UB2H
Mst1_SARAH
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AUB79393
LinkDB
All DBs
Position
817647..821117
Genome browser
AA seq
1156 aa
AA seq
DB search
MALTDPLLIHNDRPVRAGDRQDWLGLAGDARALAIAETAQRHDSALLLITPGMVEAEELR
RGLRFFGVDDIELMPDWEVLPYDIFSPHQDITSERLRALHRLPRKTQGVVIVPAATLMQR
IAPPTFLEATVIRLATGQSLNLEAMRTSLQASGYRCVSEVLEHGEFAVRGAILDLYPMGA
EAPYRVDLFDDEIDTIRRFDPETQRSIDRLENVELLPAHEFPTDEAGIRHFRREYRARFE
GDPTASPIYQSVSDGHIPNGIEAYLPLFFESTATLFDYLPAGTLAMRVGSVDDQLESEWS
QIGERYEQRRHDRERPLLTPDELYLSPDAVREGLNHRAQVALPVETGRTATHGRDRALAA
RALPDLRSTPGDDSGIAALRAFIERFEGGVLLTAETAGRREAFRERLQAAGLQPREVGDW
SNFVAEQPGLALTVAPLDEGFSLPDAGLAVVPESALLGERAEQRRRRKHSPDRDPDAIIR
DLTDLSIGAPVVHEQHGIGRYQGLQTLAVDGVQTEFLTLEYSGGDKLYVPVASLHLISRY
TGADDEAAPVHRLGSGQWEKARRRAAQKARDVAAELLDIYARREAQQGEPHVVPADDYAQ
FAAQFPFEETPDQQTAIHAVLQDLQQSRPMDRVVCGDVGFGKTEVAMRAAFAGIQSGRQV
AVLVPTTLLCQQHYQNFIDRFADWPVRIEQLSRFQSAKAQAKTLEALNEGRVDVVIGTHK
LLQQSVRFKRLGLMIIDEEHRFGVRQKEALKRLRANVDVLTLTATPIPRTLNMSLAGLRD
LSIIATPPARRLAVKTFVNEWDDTTIREACLRELHRGGQVYFLHNDVESIQRAAETLGEL
LPEARVAIAHGQMPERDLERVMLDFYHQRFNILVCSTIIESGIDVPTANTIIINRADRLG
LAQLHQLRGRVGRSHHRAYAYLIAPPRRSQTADAVKRLDAIASLEDLGIGFALASHDLEI
RGAGELLGEGQSGQIHEVGFNLYSDLLDRAVKSLKAGKEPALEAPLEQSADVELHIPALL
PEDYLPDVHTRLVMYKRIANAETGEALRELQVEMIDRFGLLPEPARNLMEIARIRQQVQA
MGITRFEVGPGGGVVQFGDAPQVDAGALVRLVQEQPAIYRLEGQERLRFKRETETAAARI
ELVDWLLEAMAMKEAA
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atggccctaaccgatccgctgctcatccacaacgaccgacccgtgcgcgccggcgaccgc
caggactggctgggtctggccggtgatgcgcgggcactcgccatcgccgagaccgcccag
cggcatgacagcgccctgctgctgatcacgcccggcatggtcgaggccgaggaactgcgc
cgcggactgcggtttttcggtgtcgatgacattgagctgatgcccgactgggaagtcctc
ccctacgacatcttctcgccccatcaggacattacctccgagcgcctgcgggccctgcac
cgtctgccccgcaaaactcagggtgtggtgatcgtgccggcggcgacgctcatgcagcgc
atcgcgccgccgaccttcctcgaggcgaccgtgatccggctcgccaccggccagtccctc
aacctcgaggcgatgcgcacatcgctgcaggcaagtggctaccgctgtgtctccgaggtg
ctcgagcatggtgagttcgccgttcgcggggcgattctcgacctctatccgatgggggcc
gaagccccctatcgcgtcgatctgttcgatgacgaaatcgacacaatccgccgcttcgat
ccggagacgcagcgcagcatcgaccggctcgaaaatgtcgagctgctgcccgcccatgaa
ttccccaccgatgaggcgggtatccggcacttccggcgcgaatatcgggcccgcttcgag
ggcgacccgacagcgagtcccatctaccagtcggtcagtgacggccacatccccaacggc
attgaggcctacctgccgcttttcttcgagtcgacggcgacgctgtttgactacctgccg
gccggcacgctggccatgcgcgtgggctcggtggatgaccagctcgagtcggaatggtcg
cagattggcgagcgctacgagcagcgccggcatgatcgcgagcgcccgctgctcaccccg
gacgagctctatctgtccccggacgccgtgcgcgaggggctgaatcaccgcgcgcaggtg
gcgctgccggtggagaccgggcggacggccacgcatggccgcgatcgtgcgctggcggcc
cgggcgttgccggatctgcgcagcacgcccggggatgacagcgggatagccgcactgcgg
gcgttcatcgagcggttcgaaggtggcgtgctgctgaccgccgagaccgccggccggcgc
gaggcctttcgcgagcgtctgcaggccgctgggctgcagccccgggaagtcggtgactgg
tccaactttgtcgccgagcagcccggcctggcgttgaccgtcgcgccgctggatgagggc
ttcagcctgcccgatgcgggcctcgccgtcgtccccgaatccgccctgctcggtgagcgt
gcggaacagcgccgacggcgcaagcattccccggaccgcgaccccgacgccatcatccgc
gacctcaccgatctgtcgatcggcgcaccggtagtccacgaacagcatggcattggccgc
taccaagggctccagacactggcggtggatggcgtgcagaccgaattcctcacccttgag
tactcggggggcgacaagctctatgtcccggtggcgtcgctgcatctgatcagccgctac
accggcgcggatgacgaggcggcgcccgtccaccgactcggcagcgggcagtgggagaag
gcccgccggcgcgccgcccagaaggcccgtgatgtggccgccgaactgctcgacatctat
gcccggcgtgaggcgcagcagggcgagccgcatgtcgtgccagcggacgattacgcgcag
ttcgccgcgcagtttccctttgaagagacccctgatcagcagaccgcgattcatgctgtc
ctgcaggatctccagcagtcccggccgatggaccgcgtggtctgtggtgatgtgggcttt
ggcaagactgaagtcgccatgcgcgcggcgttcgcgggcatccagtcaggccgccaggtg
gccgtgctggtgcccacgacgctgctctgccagcagcattatcagaacttcatcgatcga
ttcgcggactggccggtccgcatcgagcagctctcgcggtttcagtccgccaaggcgcag
gcgaagacccttgaagcgctcaacgagggtcgggtcgatgtggtcattggcacccataaa
ctgctccagcagtccgtgcgcttcaagcgcctggggctgatgatcattgacgaggaacat
cgcttcggggtgcgtcagaaggaggcactcaagcggctgcgcgccaacgtggacgtcctc
accctcaccgccacgcccattccccgcactctgaacatgtcgttggcggggctgcgggat
ctgtcgatcatcgcgacaccgccggcgcggcggctggcggtcaagaccttcgtcaacgaa
tgggatgacaccacgatccgggaggcctgcctgcgcgagctgcatcgtggggggcaggtg
tacttcctgcacaacgatgtcgagagcattcaacgggcggccgagaccctcggcgagctc
ctgcccgaagcgcgcgtcgcgatcgcccacggacagatgcccgagcgtgacctcgagcgg
gtgatgctcgacttctaccaccagcgcttcaatatcctggtgtgcagcacaatcatcgaa
agcggcatcgatgtgcccaccgccaacaccatcatcatcaatcgcgccgatcgcctgggt
ctggctcagttgcatcagctgcgtggccgggtgggtcgatcccaccatcgggcctacgcc
tatctgatcgcgccgccccgacgcagtcagaccgccgatgcggtgaagcgcctcgacgcg
attgcgtcgctcgaagacctgggcatcggctttgccctcgccagccacgatctggaaatc
cgcggcgccggtgaactgctcggcgaaggccagagcggacagatccacgaggtgggcttc
aacctctacagtgatctgctcgaccgcgccgtgaagtccctcaaggccggcaaagaaccg
gccctggaggcccccctggagcagagtgccgatgtggagctgcatatccccgccctgctc
cccgaggactacctcccggatgtgcatacccggctggtgatgtacaaacgcattgccaat
gccgagaccggcgaggcgctgcgcgaactgcaggtggaaatgatcgatcgtttcgggctg
ctgcccgaacccgcgcgcaacctgatggagatcgcccgaatccgccagcaggtacaggcg
atgggcatcacccgctttgaagtgggccccggcggcggtgtggtgcagttcggcgatgcg
ccgcaggtggatgccggcgccctggtgcggttggtccaggagcagcccgccatctaccgg
ctggagggccaggagcggctgcgcttcaagcgcgaaaccgaaaccgccgcggcacggatc
gagctggtggactggctgctggaggccatggccatgaaggaagcggcatga
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