Serratia sp. AS12: SerAS12_1949
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Entry
SerAS12_1949 CDS
T01502
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
srs
Serratia sp. AS12
Pathway
srs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
srs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SerAS12_1949
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srs03400
]
SerAS12_1949
Enzymes [BR:
srs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SerAS12_1949
DNA repair and recombination proteins [BR:
srs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SerAS12_1949
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
DUF6007
Motif
Other DBs
NCBI-ProteinID:
AEF50027
LinkDB
All DBs
Position
complement(2099712..2103191)
Genome browser
AA seq
1159 aa
AA seq
DB search
MSTSDNRNRSASPSSRYSLPDRAGDLRQLGQLTGAACAVECAEIVERHNGPVMLIAPDMQ
NALRLRDEIQQFTDQMVTTLPDWETLPYDSFSPHQEIISARLSSLYHLPTMVRGVIILPV
NTLMQRVCPHEFLHGHALVMKKGQRLSREKLRAQLEQAGYRSVDQVMEHGEFATRGALLD
LYPMGSEEPYRIDFFDDEIDSLRIFDVDTQRTLSEVEAINLLPAHEFPTDKTAIELFRSQ
WREQFEVRRDAEHIYQQVSKGTWPAGIEYWQPLFFSQPLPSLFSYLPANTLIVNTGNLES
AAERFWLDVNQRYESRRVDPMRPLLAPDSLWLRVDALFGELKAWPRMALKTEALPAKAGN
TNLDYRALPDLAVQAQNKAPLDQLRRFIESFDGSVIFSVESEGRRETLQDLLGRIKLGTS
LIQHLDQAEPAGRYMMVGASERGFLDGMRNRALICESDLLGERVSRRRQDNRRTINTDTL
IRNLAELHPGQPVVHLEHGVGRYVGLTTLEAGGIKAEYLILSYSGEDKLYVPVSSLHLIS
RYAGGADENAPLHKLGGDAWTRARQKAAERVRDVAAELLDIYAQRAAKSGFAFKHNREQY
QLFCQSFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENGK
QVAVLVPTTLLAQQHFDNFRDRFATWPIRIEMMSRFRSAKEQQQIMDDAVDGKVDIIIGT
HKLLQSDLRWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM
RDLSIIATPPARRLAVKTFVREYDSLVIREAILREVLRGGQVYYLYNDVENIEKAAEKLA
ELVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADR
FGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSTDAHKRLEAIASLEDLGAGFALATHDL
EIRGAGELLGEDQSGQMTTVGFSLYMELLESAVDALKNGREPSLEDLTSNQTEVELRMPA
LLPDDFIPDVNTRLSFYKRIASAKNDGELEELKVELIDRFGLLPDPARNLLQSAALRQHA
QKLGIKRIEGNERGGFIEFGEKNRVDPGYLIGLLQSNPQIYRLDGPTKLKFMLDLTDRQK
RLKFTEELLTAFREHTLAA
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgagcacctccgataaccgtaaccgttctgcatcgccatcctcccgttattccctgccc
gatcgcgcaggcgatttgcgccagttggggcaactaaccggcgcggcctgcgccgtggag
tgcgccgagatcgtcgaacgtcataacgggccggtgatgctgatcgccccggacatgcag
aacgccctgcggctgcgcgacgaaatccagcagtttaccgatcaaatggtgaccacgctg
cccgactgggaaaccctgccctacgacagtttctcgccgcaccaggaaattatctccgcc
cgtctgtcgagcctgtaccacctgccgaccatggtgcgcggcgtcatcattctgccggtc
aataccctgatgcagcgcgtttgtccgcacgaattcctgcacggccacgcgctggtgatg
aaaaagggccagcgcctgtcgcgcgaaaaactgcgcgcccagctggaacaagccggctac
cgcagcgtcgatcaggtgatggagcacggcgagttcgccacccgcggcgcgctgctcgat
ctgtacccgatgggcagcgaagagccttaccgcatcgatttcttcgacgatgaaatcgac
agcctgcgcatctttgacgtcgacacccagcgcacgctgagcgaagtcgaggccatcaac
ctactgccggcccatgaattcccgaccgacaaaaccgccatcgagctgttccgcagccag
tggcgcgaacagtttgaggtgcgccgcgacgccgaacatatttaccagcaggtgagcaaa
ggcacttggccggccggcatcgaatactggcaaccgctgttcttcagccagccgctgccg
tcgctgttcagctacctgccggccaacacgctgatcgtcaacaccggtaacctggagagc
gccgccgagcgcttctggctggacgtcaaccagcgttacgaaagccgccgcgtcgatccg
atgcgcccgctgctggcaccggacagcctctggctgcgggttgacgcgctgtttggcgaa
ttgaaagcctggccgcgcatggcactcaaaaccgaagcgctgccagccaaagccggcaac
accaatctggactatcgcgcgctgccggatctggctgtgcaagcccagaataaagcgccg
ctggaccaactgcgccgctttatagaaagctttgacggcagcgtgattttctcggtcgag
agcgagggccgccgcgaaacgctgcaagacctgctcggccgcatcaaactcggcacgtcg
ttaattcaacatctcgatcaggcggaaccggccggccgctacatgatggtcggcgcctcc
gagcgcggcttcctcgacggcatgcgcaaccgggcgctgatctgcgaaagcgatctgctc
ggcgaacgcgtcagccgccgccgacaggacaatcgccgcaccatcaataccgataccctg
atccgcaacctggcggagctgcaccccggccagccggtggtgcatctggagcacggcgtc
gggcgttacgttggcctgacgacgctggaagccggcggcatcaaggccgaatacctgatc
ttgtcctactccggtgaagacaaactttatgtgccggtctcttcgctgcacctgatcagc
cgctatgccggtggcgcagatgaaaatgcgccgctgcacaagctgggcggtgacgcctgg
acgcgcgcacggcaaaaagccgcggagcgggtgcgggacgtggcggccgagctgctggat
atttacgcccagcgcgccgccaaatccggtttcgccttcaaacacaaccgcgaacagtat
cagctgttctgccagagcttcccgtttgaaactaccccagaccaggaacaggcaatcaac
gctgtgctgagcgacatgtgccagccgctggcgatggacaggctggtgtgcggcgacgtc
ggcttcggcaaaaccgaagtggcgatgcgcgcggccttcctggcggtggaaaacggcaag
caggtggcggtgctggtgcccactacgctgttggcgcagcagcacttcgacaacttccgc
gaccgcttcgccacctggccgattcgcatcgagatgatgtcgcgtttccgcagcgccaaa
gagcagcaacagatcatggacgacgccgtcgacggcaaagtggacattattatcggtacc
cacaaactgttgcagagcgatctgcgctggaaagatctggggctgctgatcgtcgatgaa
gaacaccgtttcggcgtgcgccacaaagaacgcatcaaggcgatgcgcgccgatgtggat
atcctgacgctcaccgccacgccgatcccgcgtacgctgaatatggcgatgagcggcatg
cgcgacctgtcgattatcgcgaccccgccggcccgccgtctggcggtgaaaaccttcgtg
cgcgagtacgacagcctggtcattcgcgaggcgatcctgcgtgaagtgctgcgcggcggc
caggtttactatctgtacaacgacgtggagaacatcgagaaggccgcggagaaactggct
gagctggtgccggaagcgcgtatcgccatcggccacggccagatgcgcgagcgcgatctg
gagcgggtgatgaacgatttccaccaccagcgttttaacgtgctggtctgtaccaccatt
atcgaaaccggcattgatattcccagcgccaataccattatcatcgagcgcgccgatcgc
ttcgggctggcgcagttgcatcagttgcgtggccgcgtaggccgctcgcaccatcaggcc
tacgcctatctgctgacgccgaatccgaaggccatgagcaccgacgcgcacaaacggctg
gaagccatcgcttcgctcgaagatctcggcgcaggttttgccttggcgacccatgacctg
gaaatccgcggcgcgggcgagctgctgggtgaagatcaaagcggccagatgaccaccgtc
ggcttctcgctgtacatggaactgctggaaagcgcggtcgacgcgttgaaaaacggccgc
gagccgtcgctggaagatctcaccagcaaccaaaccgaagtggagctgcgcatgccggcc
ctgctgcctgacgattttatcccggacgtaaacacccgtctgtcgttctataaacgcatc
gccagcgcgaaaaacgacggtgaactggaagagctgaaagtggagctgattgaccgtttc
ggcctgctgccggatccggcgcgcaacctgttgcaaagcgcggcgctgcgccaacatgcg
cagaaactggggattaagcgcatagaggggaacgagcgcggtgggtttatcgagtttggc
gagaagaatcgggtcgatccgggttacctgatcggcttgctgcaaagcaatccgcaaatt
tatcgcctggatggaccgaccaagctgaagtttatgctggacctgaccgatcgacagaag
cgcctgaagttcaccgaggagctcttgaccgcattccgcgagcacacgttggcggcctga
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