Segniliparus rotundus: Srot_1251
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Entry
Srot_1251 CDS
T01238
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
srt
Segniliparus rotundus
Pathway
srt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
srt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Srot_1251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srt03400
]
Srot_1251
Enzymes [BR:
srt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Srot_1251
DNA repair and recombination proteins [BR:
srt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Srot_1251
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ADG97721
UniProt:
D6ZFJ7
LinkDB
All DBs
Position
1221582..1225226
Genome browser
AA seq
1214 aa
AA seq
DB search
MHVSESPLPLAGLATLIARPLGAMAGGRDGGQILSPSGALAFVVSAVAQSGPALVVVPGE
REAGTLAQELADLIGAQRVVLVPAWETLPHERLSPSLRVVGERLWGLRRFLGREPSEGRA
PDVAVMSARSFIQPVEPAVLDVEPVRLRVGREEDLTELAEQLTALGYTRVDLVAERGDFA
VRGGILDVFSPLDDHPVRVQFWGDEITELRSFSVIDQRSLSGGSENGAGQDRTELIAPPV
RELLITPEVRERARAVADGASMPAPVLEALAKLAEGVATPGVEALRDVLSGAPLKSLADM
LEPGTRLVLGEVERVAARAVDLIRTDEEFRAAAWQAASEESAPIDSTGCAYRDVASLREQ
ARARGCAIWEVSSLPNPAQLDFGLSLPEVARPGEPVLESVVVALRGQLASGGVAVVVAQG
QGTVQRVVEQLRAADLPVRAGAGGETPQAGVVTVLRGALANGVRLAPPGGGAVPDPPNVL
VLTEAELTGAKTTNIGPPKRLGTRRRDQVDPLALKAGDYVVHDQHGIGRFVELVERTVGG
ARREYVVVEYASSKRGHPPDRLYVPMDALDQLSRYVGGESPALSKMGGSDWATTKRQARK
AVREVASELVRLYAARQSAKGHAFGPDSPWQSELEGAFAHAPTPDQLTTIGEVKADMERE
VPMDRVVCGDVGFGKTEIAVRAAFKAVQDGKQVVVLAPTTLLADQHLRTFSERMAPFPVT
VKGLSRFTDPAESKDTVAKVADGQVDVLIGTHRVLQSKVKFKDLGLVIVDEEQRFGVEHK
EHIKALRVNVDVLTLSATPIPRTLEMSLTGIRDMSTILTPPEERFPVLTYVGAHDEKQVA
AALRRELVRDGQVFYIHNRVSSIDKTAARLKELVPEARVAIAHGQMGEEQLEATAEAFWR
GEHDILVCTTIVESGLDIANANTLVVERADTLGLAQLHQLRGRVGRGGERAFAYFLYDPE
RSLSETAHERLATIAQHSSLGSGMAVAMRDLEIRGAGNVLGHEQSGHIAGVGFDLYIRLV
GEAVVAYRAALDGEEIPTAPSEVRIDLPVDAHIPVAYVASERLRLEAYRGLASAEDHAQL
EAKTAELEDRYGPVPPEVARLREIAELKLLCRRHAITEAAVAGRRLRLSPVSLLDSQQVR
LARLFPGSQWRATSGVLTVPLPSSGFGEAAPDGSALIDFVRRVVHAIHAPPQAQSQSAGA
SASQRAVPAAGGAR
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
ttgcacgtttcagagtcccccctgcctctcgcagggctcgcgactctcatcgcgcggccc
ctcggcgcgatggcgggcgggcgcgacggcggccagatcctttccccgtccggcgcgctg
gcgttcgtcgtgtcggcggtggcgcagagcggccccgcgttggtggtcgtgccgggggag
cgggaagccgggacgctcgcgcaggagctcgccgacctcatcggcgcgcaacgcgtcgtt
ctcgtcccggcctgggagactttgccccacgagcggctttcgccgagccttcgcgtcgtc
ggagagcgtctatggggattgcgccgcttcttagggcgagagccgagcgaaggccgagcg
cccgatgtcgccgtcatgagcgcgcggtcgttcatccagcccgtcgaacccgctgtgctc
gacgtcgagccggtgcgattgcgggtcggccgcgaggaggacctgacagagctcgccgag
cagctgaccgcgctgggctacacgcgagtggacttggtcgccgagcgcggcgacttcgcg
gtgcgaggcgggatcctggatgttttctcgcccctggacgaccacccggtgcgggtccag
ttctggggcgacgaaatcacggagctgcggtccttctcggtgatcgaccagcgttcgctc
agcggcgggtcggaaaacggcgccggacaagaccggacggagctcatcgccccgccagtt
cgagaattgctcatcacaccggaggtccgcgagcgggctcgcgccgtggcggacggcgcc
tccatgcccgcgccggttctcgaggcgctcgccaaactggccgaaggggtcgcgactccc
ggtgtggaagcgttgcgggacgtgttgtcgggggcgccgctgaagagcctggccgatatg
ctcgaacctggaacgcggctcgtgctcggcgaggtcgagcgggtcgccgcccgcgcggtc
gacctcatccgcaccgacgaggaattccgcgccgccgcctggcaggccgcgtccgaggaa
tcggctccgatcgacagcacgggctgcgcgtaccgcgatgtggcgtctctgcgagagcaa
gctcgggcgcggggttgcgcgatctgggaggtctcctccctgccgaacccggcccagctc
gacttcgggctctcgctgccagaggtcgcgcgtcccggcgagccggtgctcgaatccgtc
gtcgtcgcgctccgaggccaattggcctccggtggcgtcgcagtggtggtcgcccaaggc
caaggcaccgtgcagcgcgttgtggagcagctgcgcgcagcggatcttcccgtgcgtgcc
ggggcgggcggcgagaccccgcaagcgggcgtggtgactgttctgcgcggcgctttggcg
aacggcgtccggctggccccgcccggtggcggcgctgtgcccgacccgccgaacgtcctc
gtcctcaccgaggcggagctgacgggcgcgaagacgacgaatatcggaccgcccaaacgg
ctcggcacgcgaaggcgcgaccaagtggacccgctcgcgctcaaagcgggcgactatgtg
gtgcacgaccagcacggcatcgggcggttcgtggaactggtggaacggactgttggcgga
gccagacgcgagtacgtggtcgtggagtacgcctccagcaaacgaggccatccgcctgat
cggctctatgtcccgatggacgccctcgaccagctcagccggtacgtcggcggcgagtcc
ccggcgttgtcgaagatgggcggctcggactgggcgacaaccaagcgccaggcccgcaag
gcggtgcgcgaagtcgcctccgagctggtccgcctctatgcggcgcggcaaagcgccaag
ggccatgctttcggcccggactccccgtggcagagcgaactcgaaggcgctttcgcccac
gcgccgactccggaccagttgaccaccatcggcgaggtgaaggcggatatggagcgcgag
gtccccatggaccgagtcgtctgcggggacgtgggcttcggcaagaccgagatcgcggtg
cgcgccgcgttcaaagcagtccaggacggcaaacaggtcgtggtgctcgctccgacgacg
ctgctcgccgaccagcatctgcgcaccttctccgagcgcatggccccgttccccgtcacg
gtcaaaggcctgtctcggttcaccgaccccgccgagtccaaagacacggtcgccaaagtc
gcggacggccaagtggatgttctcatcggcacgcatcgcgtgctgcagtcgaaagtgaag
ttcaaagacctcggcctggtgatcgtcgatgaggagcagcgtttcggcgtcgagcacaag
gagcacatcaaagcgttgcgggtgaacgtggacgtgctcacgctctctgccacccccatt
cctcggacgctggagatgagcctcaccggcattcgggacatgtccacgatcctcaccccg
cccgaggagcgtttccccgtgctcacctacgtcggagcccacgacgagaagcaggtcgcc
gccgcgctccgccgggagctggtgcgcgacgggcaggtcttctacatccacaacagggtc
agttcgatcgacaagaccgccgcgcgcctgaaagagctcgtcccagaggcgcgtgtcgcg
atcgcgcacggccaaatgggcgaagagcagttggaggcaaccgctgaggcgttctggcgc
ggcgagcacgacatcctggtctgcaccaccatcgtcgagtccggtttggacatcgccaat
gcgaacacccttgtcgtggagcgcgcggacaccctcggcctggcccagttgcaccagttg
cgcggccgggtcgggcgcggcggcgagcgcgcgttcgcgtacttcctctacgacccggag
cgttcgctgtccgagacggcgcacgagcgcctcgccaccatcgcgcagcactcctcactc
ggctcgggcatggcggtggccatgcgagaccttgagatacggggcgcgggcaatgtgctc
ggccatgagcagtccgggcacatcgccggcgtcggtttcgacctctatatccgtttagtg
ggcgaggcggtggtcgcgtaccgcgcggcgctcgacggcgaggagatcccgaccgcgcct
tccgaagtccgtatcgacttgcccgtggacgcgcacatcccggtcgcctacgtcgcgagc
gaacggctgcgcctcgaagcgtaccggggcctcgcctcagccgaggaccacgcacagctg
gaagcgaagaccgccgagctcgaagaccgctacggacctgttccgcccgaggtcgcgcgg
ctgcgggaaatagcagagctcaagctcctctgccgccgtcacgcgatcacagaggcagcg
gtggcgggacggcggttgcgcctttccccggtgtcgctcctcgattctcagcaggtccgc
ctcgcccgcttgttcccaggctcgcaatggcgcgccacctcgggggtgctcacggtcccg
ttgccttcgtccggtttcggcgaagccgcgccggacggctcggcgttgatcgatttcgtg
cgccgtgtggtgcatgcgatccacgccccgccgcaggcccagtcccaaagcgcgggggct
tctgcttcgcagcgagctgttcccgccgcaggaggagcccgatga
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