Streptomyces rutgersensis: F0345_18130
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Entry
F0345_18130 CDS
T08623
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
srug
Streptomyces rutgersensis
Pathway
srug03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
srug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
F0345_18130 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srug03400
]
F0345_18130 (mfd)
Enzymes [BR:
srug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F0345_18130 (mfd)
DNA repair and recombination proteins [BR:
srug03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
F0345_18130 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
MFD_D3
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QNE82793
UniProt:
A0A7G7C5C7
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All DBs
Position
4288149..4291682
Genome browser
AA seq
1177 aa
AA seq
DB search
MSLHGLLDAVIEDPALSQALKAAGDGHLLAADLVGPPAARPFTVAALARETGRTVLAVTA
TGREAEDLAAALRTLLPPDGIVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPDADDP
GTGPVSVVVASVRSVLQPQVKGLGDLEPVALRAGRTTDLEEVVRALAAAAYSRVELVEKR
GEFAVRGGILDVFPPTEDYPVRVEFWGDEVEEIRYFKVADQRSLEIAEHGLWAPPCRELL
LTDQVRERAAALAEDHPELGELLGKIAEGVAVEGMESLAPVLVDEMELLLDVLPEGAMAL
VCDPERVRTRAADLVATSLEFLQASWAASAEGGQAPIDVGAASLRGIADVRERARELGMM
WWSVSPFAADEETYDGDTWQLGMRAPETYRGDTARALADTKRWLGEGWRTVFVTEAHGPA
ARTVEVLGSEGVPARLDGDLAEIGPSVVHVACGAIDHGFTDERLKLAVLTETDLSGQKAA
GKDGQRMPTRRRKTIDPLTLEPGDYIVHEQHGVGRYIEMVQRTVQGATREYLLVEYAPAK
RGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYS
ARMAAPGHAFGQDTPWQRELEDAFPYMETPDQLSTIAEVKDDMEKTVPMDRLICGDVGYG
KTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYAQFPVNVRALSRFQSDAEAK
ATLEGLRDGSVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLT
MSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYDPKQIGAAIRRELLREGQVF
YIHNRVESIDKAAARLREIVPEARIATAHGKMSEQALEQVVVDFWEKKFDVLVSTTIVES
GIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATI
AQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRAALDGG
VEEEPAPEVKIELPVDAHVPHDYAPGERLRLQAYRAIASATTEDDIRAVREELTDRYGKL
PEPVENLLLVAGLRMLARSCGVAEIVLQGNNVRFGPVELRESQQLRLNRLYPRTVVKANT
HQILVPRPTTGKIGGKPVVGRELLSWVGEFLTSILGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggactgctcgacgcggtgatcgaggaccccgcgctgtcacaagcgctg
aaagcggccggggacgggcacctcctcgccgccgacctggtcggcccgcccgccgcgcgg
cccttcaccgtcgccgccctcgcccgcgagaccggccgcaccgtgctcgccgtcaccgcc
accggccgcgaggccgaggacctggcggccgccctgcgcaccctgctcccgccggacgga
atcgtggagtacccgtcctgggagacgctgccgcacgagcggctctccccgcgctccgac
accgtcggccgccgcctcgccgtgctgcgccgcctcgcccacccggacgccgacgacccc
gggaccggcccggtctccgtcgtcgtcgcctccgtacgctccgtgctccagccgcaggtc
aaagggctcggcgacctggagccggtggcgctgagggccgggcggaccaccgacctggag
gaagtcgtccgcgccctggccgccgccgcgtactcccgcgtggagctggtcgagaagcgc
ggcgagttcgccgtgcgcggcggcatcctcgacgtcttcccgccgaccgaggactacccg
gtccgcgtcgagttctggggcgacgaggtcgaggagatccgctacttcaaggtggccgac
cagcgctccctggagatcgccgagcacggcctgtgggccccgccctgccgcgaactgctc
ctcaccgaccaggtccgcgagcgcgccgccgccctcgccgaggaccaccccgaactcggc
gaactcctcggcaagatcgccgagggcgtcgccgtcgagggcatggagtccctcgccccc
gtcctcgtcgacgagatggaactcctcctcgacgtgctgccggagggcgccatggccctg
gtctgcgaccccgagcgggtccgtacccgcgccgccgacctggtcgccaccagcctcgaa
ttcctccaggcgtcctgggcggcctccgccgagggagggcaggcccccatcgacgtcggc
gcggcctccctgcgggggatcgccgacgtccgcgaacgcgcccgcgaactgggcatgatg
tggtggtccgtctcgccgttcgccgccgacgaggagacgtacgacggcgacacctggcaa
ctggggatgcgcgcccccgagacgtaccggggcgacaccgcccgtgccctggccgacacc
aagcggtggctcggcgagggctggcggaccgtcttcgtcaccgaggcgcacggccccgcc
gcccgtaccgtcgaggtgctgggctccgagggcgtcccggcccggctcgacggggacctc
gccgagatcggcccgtccgtggtccacgtcgcctgcggcgccatcgaccacggcttcacc
gacgagcgcctcaagctcgccgtgctcaccgagaccgacctctccggccagaaggcggcg
ggcaaggacggccagcggatgcccacccggcgccgcaagaccatcgacccgctcaccctg
gagcccggcgactacatcgtccacgagcagcacggcgtgggccgctacatcgagatggtc
cagcgcaccgtccagggcgccacccgcgagtacctcctcgtcgagtacgcccccgccaag
cgcggccagcccggcgaccgcctctacatccccaccgaccagctcgaacaggtcaccaag
tacgtcggcggcgaggcacccaccctgcaccggctcggcggcgccgactggaccaagacc
aaggcgcgcgccaagaaggccgtcaaggagatcgccgccgacctcatcaagctctactcg
gcccggatggccgcccccggccacgccttcggccaggacaccccctggcagcgcgaactg
gaggacgccttcccgtacatggagacgcccgaccagctctccaccatcgccgaggtcaag
gacgacatggagaagacggtcccgatggaccgcctgatctgcggcgacgtcggttacggc
aagaccgagatcgcggtccgcgccgccttcaaggccgtccaggacggcaagcaggtcgcc
gtcctcgtccccaccaccctcctggtccagcagcacttcggcaccttctccgagcggtac
gcgcagttcccggtgaacgtccgcgccctctcccgcttccagtccgacgccgaggccaag
gccaccctggaggggctgcgggacggctccgtcgacatcgtcatcggcacccaccgcctc
ttctcctccgagaccaagttcaaggacctcggcctggtcatcgtcgacgaggagcagcgg
ttcggcgtcgagcacaaggaacagctgaagaagctccgcgccaacgtcgacgtcctcacc
atgtccgccacccccatcccgcgcaccctggagatggcggtcaccggcatccgcgagatg
tcgacgatcaccaccccgcccgaggagcgccacccggtcctcaccttcgtcggcccctac
gacccgaagcagatcggcgccgccatccgccgcgaactcctccgcgaggggcaggtcttc
tacatccacaaccgggtcgagtccatcgacaaggccgccgcccggctccgcgagatcgtc
cccgaggccaggatcgccaccgcccacgggaagatgtccgaacaggccctggaacaggtc
gtcgtggacttctgggagaagaagttcgacgtcctggtctccaccaccatcgtggagtcc
ggcatcgacatctccaacgccaacaccctcatcgtcgagcgcggcgacaacttcggcctc
tcccagctccaccagctccgcggccgcgtcggccggggccgcgaacgcggctacgcctac
ttcctctacccgcccgagaagcccctgaccgagaccgcccacgagcgcctcgccaccatc
gcccagcacaccgagatgggcgccggcatgtacgtcgccatgaaggacctggagatccgc
ggcgccggcaacctcctcggcggcgagcagtccggccacatcgccggcgtcggcttcgac
ctgtacgtccgcatggtcggcgaggccgtcgccgactaccgtgcggccctcgacggcggg
gtcgaggaggaaccggcccccgaggtcaagatcgaactccccgtcgacgcccacgtcccg
cacgactacgcccccggcgagcgcctgcgtctccaggcgtaccgcgccatcgcctccgcc
accaccgaggacgacatccgcgccgtccgcgaggaactcaccgaccgctacggcaagctc
cccgagcccgtcgagaacctcctcctcgtcgccggcctccgtatgctcgcccgctcgtgc
ggcgtcgcggagatcgtcctccagggcaacaacgtccgcttcggtcccgtggaactccgg
gaatcccagcaactccgcctcaaccgcctctacccccgcacggtcgtcaaggccaacacc
caccagatcctcgtcccgcgacccacgaccgggaagatcgggggaaagcccgtggtgggg
cgggagctgctgtcctgggtgggggagttcctgacgtcgatcctggggtcgtag
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