Sinocyclocheilus rhinocerous: 107713612
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Entry
107713612 CDS
T04916
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107713612
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
srx03041
]
107713612
Enzymes [BR:
srx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107713612
Spliceosome [BR:
srx03041
]
Complex A
U2 snRNP components
U2 related factors
107713612
Complex B
107713612
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
PMI_typeI_cat
Motif
Other DBs
NCBI-GeneID:
107713612
NCBI-ProteinID:
XP_016374669
LinkDB
All DBs
Position
Unknown
AA seq
1032 aa
AA seq
DB search
MFERHCDETMGRESRHYRKRSSSKGRSGSRSKSRSPDSKRSKKEEQTGSRTRERSRRERS
RRSRSRERKRPRRSRSRDRRRSRSRERRSQGRSKEKSENAEPSADKKKIKEEKEEEKAED
QDFDQNTLEEEMRKRKERVEKWREEQRKKAMENIGELKKELEEMKQGKKWSLEDDDGQRA
FTHSDKLTDMHHTVRKSFQEEESQMEQETGEELDPLDAYMEEVKEEVKKFNMGIMKGGND
KKGSVSVTKVMTVMKTKKMVHTTKKKGELMENDQDAMEYSSEEEEVDLQTALTGFQTKQR
KVLEPVDHQKIEYESFRKNFYVEVPELFRMSPEEVNEYRLELEGITVKGKGCPKPIKTWV
QCGISMKVLNAMKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIL
DQRPVGEAEGPIAMIMTPTRELALQITKECKKFSKSLGLRVVCVYGGTGISEQIAELKRG
AEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVMDEADRMFDMGFEPQVMRIVDNVRPDRQ
TVMFSATFPRTMEALARRILSKPIEVQVGGRSVVCSDVEQHVIVIAEEKKFLKLLEILGH
YQEKGSVIIFMDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGACRLLVA
TSVAARGLDVKQLILVINYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEEQARYSGDII
KALELSGSAVPPELELLWTNFKEQQKAEGKSIKSSSGFSGKGFKFDETEHALANERKKLQ
KAALGLHDSDDEDAALDIDEQIESMFNSKKRVKDLSAPGGSAGAAAVGVSGSVTAVSGLS
TPSAGNIQKLEIAKKLALKIQVQKNLGAEAQDVMQQATNAILRGGTMIAPSVSAKTIAEQ
QAEKINAKLNYTPVEKLEEERQAAEATDTVKRYEEELEINDFPQTARWKVTSKEALQRIG
EYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLIKEELIRLQNS
YQPTSKSRYKVL
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atgtttgagcgacactgcgacgaaaccatggggcgagagtcacggcattacaggaagcgc
tccagctcgaagggccggtccggcagcaggtctaagagccggtcgccggactccaagcgc
tctaagaaggaggagcagacgggatcccgcacccgcgagcgcagccgcagagagaggtca
cgcaggtcacgctccagagaacgaaagagaccgaggcgctccaggagtcgagacaggaga
cgctcacgcagccgagagcgcaggagccaagggaggagcaaggagaagtctgagaacgca
gagccgtccgctgacaagaagaagatcaaggaggagaaggaggaggagaaggctgaagat
caggactttgaccagaacactctggaggaggagatgaggaagaggaaggagcgagtggag
aagtggagggaggagcagaggaagaaagccatggagaacatcggagaactcaagaaggag
ctggaggagatgaagcaggggaagaagtggagtctggaggacgatgacggtcagagagcc
ttcactcattcagacaaactaaccgatatgcatcacactgttaggaaaagttttcaagag
gaggagtcacagatggagcaggagaccggagaggagctggaccctctggacgcttacatg
gaggaggtcaaagaggaggtcaagaagttcaacatgggtatcatgaaaggaggcaatgac
aagaaaggtagtgtgtctgtgaccaaagtgatgaccgttatgaagacgaagaagatggtg
cacaccaccaagaagaaaggagagctgatggagaacgaccaggacgccatggagtattca
tcagaggaagaggaagtggacttgcagacggccctcacaggctttcagaccaaacagagg
aaagttctggagccggttgatcatcagaagatcgagtacgaatccttccgcaagaacttc
tatgtggaggtgccagagctgttcaggatgagccctgaagaggtgaacgagtaccgtctg
gagctggagggaatcaccgtcaaaggcaaaggctgtccgaagcccatcaagacgtgggtg
cagtgtgggatatccatgaaagtgctgaacgcgatgaagaaacacaactatgagaagccg
accccgatccaggcccaggccatcccagccatcatgtctggacgcgacctcatcggcatc
gctaaaacaggaagtgggaagaccatcgccttcctgctgcccatgtttcgccacatctta
gaccagcggccagtgggagaggcagaaggacccatcgccatgatcatgacgccgacgcga
gagctggcactgcagatcaccaaagagtgcaagaagttctccaagtctctgggtctgcgt
gtggtgtgtgtgtacggcggcaccggcatcagcgagcagatcgcagagctgaagcgcggc
gcagagatcatcgtgtgcactccgggacgcatgatcgacatgctcggtgccaacaacggt
cgcgtgactaatctgcgcagggtcacgtatgtggtgatggacgaggccgaccggatgttc
gacatgggctttgagccgcaggtgatgcgtatcgtggataacgtgcggcccgaccgtcag
accgtcatgttctcggccacgttcccgcgcacgatggaggctctggcgcgcaggatcctg
tccaaacccatcgaggtgcaggtgggaggcaggagcgtggtgtgttcagacgtggagcag
cacgtgattgtgatcgcggaggagaagaagttcctgaagctgctggagattctgggtcac
tatcaggagaagggctccgtcatcatcttcatggacaaacaggagcacgccgacggcctc
ctcaaagacctgatgaaggcctcgtacccctgcatgtctcttcacggaggcatcgatcag
tacgacagggacagcatcatcaatgacttcaagaacggcgcgtgtcgtctgctggtggcc
acctcggtggcggctcgaggcctggatgtcaagcagctgatcctggtgattaactacagc
tgtcccaaccactacgaggactacgtgcaccgcgccggacgcacgggacgggctgggaac
aagggttacgcgtacaccttcatcactgaggaacaggcccggtactccggagacatcatc
aaagcgctggagctgtccggatcggccgtgccgccggagctcgagctgctctggaccaac
ttcaaagagcagcagaaagccgaggggaagagcatcaagagcagcagcggattctctggg
aagggctttaagttcgatgagactgagcatgcgctggctaacgagaggaagaagctgcag
aaggctgcgttaggcctgcatgactctgatgatgaggatgcggctctggacatcgacgag
cagatcgagagcatgtttaactctaagaagcgtgtgaaggatctctctgctccgggtggc
tctgcgggagccgctgctgtcggtgtgagcggatctgtgaccgctgtgtccggtctgagc
actccgtctgccggaaacatccagaaactggagatcgccaagaaactggccctcaagatc
caggtgcagaagaacctcggcgcagaggctcaggatgtgatgcagcaggccacaaacgcc
atcctgcgcggcgggacgatgatcgcgccctccgtctcggccaagaccatcgcggagcag
caggcggagaagatcaacgccaaactgaactacactccggtggagaagctggaggaggag
cggcaggccgccgaggccacggacaccgtcaagagatacgaggaggagctggagatcaac
gacttccctcagacggcgaggtggaaggtgacgtctaaggaggctcttcagcgcatcggc
gagtattcagaggcagccatcacgatccgaggaacatattttccgccgggcaaagagccc
aaagagggagagcgcaagatctacctggccatcgagagtgccaatgagctggctgtgcag
aaggccaaagcagaaatcacacggctgatcaaagaggagctgatccgtctgcaaaactca
taccagcccaccagcaaaagcagatacaaggttttgtag
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