Sinocyclocheilus rhinocerous: 107720289
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Entry
107720289 CDS
T04916
Name
(RefSeq) tetratricopeptide repeat protein 37-like isoform X1
KO
K12600
superkiller protein 3
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107720289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srx03019
]
107720289
Messenger RNA biogenesis [BR:
srx03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
107720289
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_14
TPR_19
TPR_16
TPR_11
TPR_8
TPR_12
TPR_17
TPR_9
ANAPC3
TPR_7
TPR_MalT
RPN7
TPR-S
SHPRH_helical-1st
PknG_TPR
TPR_15
Coatomer_E
BTAD
TPR_21
Motif
Other DBs
NCBI-GeneID:
107720289
NCBI-ProteinID:
XP_016383455
LinkDB
All DBs
Position
Unknown
AA seq
1568 aa
AA seq
DB search
MSSKEVKAELKSAREAIKNKGFKEALKHCKAVLKLEKNNYNAWVFIGVAATELQQLDQAQ
TAYRKATELEPEQLLAWQGLANLYEKSDRADFKAELPKIYQKLITLYETSDKAKCFEVSK
KLVEVYQSEKNYLQVARVWRRLIQVREAEEGVENLELLELWKEMTRLLQDTVEDQDNETQ
QHLISAFERAFQLMINVPSEAHRSLSQDYIKCLSKLPHEVAKLKEVCDATLSRYPTHSYP
LEALSEHYIRTGDCSEEAARCFSRLSELDPNNSHAHFGLGIKACQDKKYEDAIKSISLGL
KRMRSSIIGWYNLALAQLKMHKYSDSATASSQGLKSSVGNSDDWTHKLQRLKLEALVRTG
RDQDAEEALQILTQISDAKNDPVLLALKGRAHLQKGQTEEAFQVSAELLSSHPGSVESLT
LKGLVHIAKEQHKQAEESFLEALSGSPDNGELFFLMGRLFWNMGEEMRRDRSKAHTHLLK
AAKLDPYLGSVFRFLGHYYREVAKDQGRARGCYKRAFELDSSDAESGAATVDLSMEQGDM
DSALTVLQSVTERATPGSAKWAWMRRGLYHLKIGQHQQAIADLQAALRADPQDWVCWECL
GEAYLNRRSFTAALKAFDKAHTLQPTSIYSLYQTAAIKQILGRFKEAAAEYRQILEQEDY
VPALKGLGECLLALARSALDDYLDGRAVDLIQNAIHYLFRALKQRPDLSCLWKLLGDACT
TSRTVSPNRAKVLVPGALCGMDPLDQGHTLDQRQLLTLGERCFGRALKLMPEAPSLWCDL
GLNYYHQSRLLSCLNPEEDQQPLLEKAIQCVKKAIMLDSANHTYWNALGVVSMAKGIENF
ALAQHCFIKSVKAESNNVVAWTNLGALYLKKGNIELSHEAFKIAQSLEPLYVNCWIGQAL
IAESVGSYDTMDLFRHTTELSTHTEGVKGYAYWVCSTLLDRSNRDSEIYLYNIVQMNAVS
AAQVALSKYTERVQTDPDAFIMLGYLNTHLQLRKQATEAYRRAVELLQPSPHTDKLSFAL
RGYGRVLSDDGQWEEAVRIYSSTPLEELHDLIGLALAYFRIGRMPESVQAYEKALAVASS
EKEKACILTALALIQHRLGNIDHAKTLLFKCSMLKEPVSESLQCLCSLGLVHGDVTLASA
TLTELLKLGERVGGAVEERCLLTCTLLALQGNYSGVHREAARAIHRNPGNPSLWALLSRL
VPQYCPNKANGGAVAGSVACHASLTLGKRALLYSGVNQLASGRHSGEDRRLNALKTIQRA
VLLCPDDPAGWAGLMAACHTENTACLLQGSAPRREDLERAHMTLVSEKVKGLQAEDGLLA
QALEGWVLQQAVTGLKQSGQYDQAETLCSQVLSVSPEQPVVFLMLRQVQCEHLLLSDASN
CVPPAVLDQLSAAVMANHTSVSAWHWLAEVYRSQGLLAQASVAYRQSLQLASQLGDHIGK
MSSLLRLALLALMPCLAGVCVSEWKDLVLEASTEVLKMGSSPVALLFQALLQFSIKMGAR
ETRRLLEKIVYASASGGSETIASVARWYLLRHLHAKDDLELIDTLLVKATAEGDRRLVDF
HRRLYPSS
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtaaagaagtaaaagctgaactaaaaagtgccagagaagccatcaaaaataaa
gggtttaaagaagctttgaaacattgtaaggctgttctcaaacttgagaagaataactac
aatgcctgggtgtttattggagtggcagctacagagctgcagcagctggatcaggctcag
accgcctacagaaaggccactgaactggagccagagcaactgcttgcatggcagggttta
gcaaatctgtacgaaaaaagtgaccgagcagatttcaaagctgagctgccaaagatttac
cagaaacttattacactgtatgaaacctcagacaaagcgaaatgttttgaagtgagcaag
aagttggtggaagtctatcagtcggagaagaactatttacaggtggcccgagtgtggagg
aggttaatccaggtaagggaggcagaggaaggggtggagaatttagagctgctggagctg
tggaaggagatgaccagactcttgcaggacacggttgaggatcaggacaatgagactcaa
caacacctgatatcagcatttgaaagagctttccaattgatgataaatgtgcccagtgaa
gcccacaggagcctttcacaggactacattaaatgtctttccaagcttcctcatgaggtg
gccaagctaaaggaagtttgtgatgccacgctgtcccgctatccgacacactcctaccct
ctagaggccctcagtgagcactacatcagaacaggtgactgcagtgaggaagctgcccgc
tgtttcagccgtctctcggaactggatccaaacaactcacacgctcactttggtcttggt
attaaagcttgtcaggataaaaaatatgaggatgccatcaaaagtattagtctaggattg
aagcgtatgcgctcctccatcattggctggtataatcttgctctggctcaactaaaaatg
cataaatactctgacagtgccacagcttccagccaagggctgaagtcgagtgtggggaac
tctgatgattggactcataagctgcagaggttgaaactagaggctctggtaaggacagga
agagaccaggatgctgaggaagctctgcagatccttacacagatttcagatgccaaaaat
gacccagtgcttttagctttgaaaggaagagcccacttgcaaaaaggccaaactgaggaa
gcatttcaggtttcagctgagctgttgagctctcacccaggatctgtggagagtctcact
ctgaaggggttggtgcatattgcgaaagaacagcacaaacaagctgaagaaagctttcta
gaggctttatctggtagcccagataatggggagttgttcttcctgatggggcgcctgttc
tggaacatgggagaggaaatgcgaagggatcgtagcaaagcccatacacatttactcaag
gctgctaaactggacccgtatctcggttcagtgtttcgttttctgggtcattactataga
gaggtagcaaaagatcagggcagagccagaggctgctataagagagcgtttgagctggat
tcctctgatgcagagtctggagcggctactgtagacctcagcatggagcagggggacatg
gactcagctctgactgttctgcagtctgtaacagagagagccactcctggctctgctaaa
tgggcctggatgaggagagggctctaccacctcaagattggccagcatcaacaggccatt
gcagatctgcaggcggcgttgagggcagatcctcaggattgggtgtgctgggaatgttta
ggtgaggcttaccttaaccgcaggagtttcacagcagccctgaaagcatttgataaagca
catactctgcagcccacctccatctacagcctctatcagaccgctgccatcaaacagatc
ctcggccggtttaaagaggccgctgcagagtacaggcagatcttagagcaggaggactac
gtgccggcattgaaaggtctgggtgaatgcttgctagccttggctagaagtgcacttgat
gactatcttgatggaagagctgtagatttgatacagaatgccatccattaccttttcaga
gctttaaagcaaaggccagacctgtcgtgtctgtggaagttactaggtgatgcctgcacc
acttccagaactgtgtccccaaaccgagccaaagtgctggtgcctggagctctatgtgga
atggatccacttgatcagggccatacactggaccagagacagctcctcactctaggagaa
aggtgctttggtcgtgctttgaaactcatgccggaggcccctagtctgtggtgtgacctt
ggcctgaactactaccaccaatccagactgctcagctgcctcaatcctgaagaggatcag
cagcctctgctggagaaagccatacagtgtgtgaagaaggcgatcatgctcgacagtgca
aatcacacatactggaatgccctcggggtggtctccatggcaaagggaattgaaaacttt
gcacttgcacaacactgctttatcaaatcggtaaaagcggagtcaaataatgtggttgca
tggaccaaccttggtgctttgtatctgaagaagggaaatatagagctctcgcatgaagct
tttaagattgctcagtctctagaacccctctatgtgaactgctggatcggacaggccctg
attgctgagtcagtgggcagttatgacaccatggatcttttcagacacaccacagaactg
agcactcataccgagggagtgaagggttatgcatattgggtttgctccacactgctggac
aggagcaacagagactcagagatctacctctacaacatagtccagatgaacgctgtctct
gctgcccaggtggctctgagcaagtacaccgagagggttcagacagacccagacgccttc
atcatgctcggatacctgaacacacacctgcagctgaggaaacaggccactgaggcatat
cgcagagctgtcgagttgcttcagccatcccctcacacagataagctcagctttgctctg
aggggttatggacgtgtactcagtgatgatggacagtgggaagaagcagtgcgtatttat
tcctccacaccactagaggagctgcatgatctcattgggctggcgcttgcctatttcaga
atcggtcgcatgccagaaagtgttcaggcctatgagaaagccctcgcagttgcctctagc
gagaaggaaaaggcctgtatactcactgcactggccctgatacagcacaggctgggcaac
attgatcatgccaaaactcttctcttcaagtgctccatgctgaaagagcctgtctcagag
agtctgcagtgtctgtgttctctgggtttggttcatggggatgtgaccctggcaagtgct
acgcttactgagctgctaaaactgggggaacgtgtaggaggcgctgtggaggagcgctgt
ctgctcacttgcaccctgctggctctgcagggcaactatagcggcgtacacagggaggct
gctagggctatacacaggaacccaggaaatccttctctctgggctcttctctccagactg
gtcccacagtactgccccaacaaagccaatggaggtgctgtggctggcagtgtggcgtgt
catgccagcttgacgcttggaaagagggcgttgctgtacagtggagtgaatcaattggcc
tcaggccggcactctggtgaggacagaagactcaacgctctgaaaacaatccagagagct
gtgctgctgtgcccagacgatcctgctgggtgggcggggctaatggctgcctgtcacaca
gagaacactgcatgcttactccaaggctccgcccctcgcagagaagatctggagagggcg
cacatgacactggtgtctgaaaaagtgaagggcctgcaggcagaggatgggctcttggct
caggctctggagggatgggtgctgcagcaggccgtgactggactcaaacagagtggccaa
tatgaccaggcagagactctctgctcccaggttctgagtgtatctccagagcaacctgtg
gtgttcctgatgttaaggcaggttcagtgtgagcacctcctgttgtctgacgccagtaac
tgtgttcctcctgcggtactggatcagctcagcgctgctgtcatggccaaccacacatct
gtgtccgcctggcattggttggcagaagtgtaccgttctcagggtctgctggctcaggcc
tctgtggcatatagacagagtcttcagctggcctctcagctcggtgaccacattggaaag
atgagcagtctgctccgactagccctgctggcactcatgccgtgtttggctggtgtctgt
gtctctgagtggaaggatctggtgttggaggccagcactgaagtcttaaagatgggcagc
tcaccagtagctctgctcttccaagccttactgcagttctctataaagatgggtgccagg
gaaacccgtcgcctgttggagaaaatagtttatgcttcagcctcaggcggctctgaaaca
atagcgtcagtggcacgctggtacctcctgcgccacctgcacgccaaagatgacctggag
ctgatagatactctgttggtgaaggcaacagcagaaggagaccgcagactggtggatttc
cacagacgcctttacccatccagctga
DBGET
integrated database retrieval system
