Sinocyclocheilus rhinocerous: 107740548
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Entry
107740548 CDS
T04916
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03013
Nucleocytoplasmic transport
srx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107740548
03015 mRNA surveillance pathway
107740548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srx03019
]
107740548
Enzymes [BR:
srx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107740548
5.6.2.5 RNA 5'-3' helicase
107740548
Messenger RNA biogenesis [BR:
srx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107740548
mRNA cycle factors
Common to processing body (P body) and stress granule
107740548
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
UPF1_1B_dom
AAA_11
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
SRP54
UvrD_C_2
UvrD-helicase
AAA_22
YusW
Motif
Other DBs
NCBI-GeneID:
107740548
NCBI-ProteinID:
XP_016408478
LinkDB
All DBs
Position
Unknown
AA seq
1021 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGVLPNGEDAVVKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQXRCNSTDMMMIALVLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDMAPLWKGIG
HVIKVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSF
LALHNQIRNMDSMPENIKLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRL
QVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIRKGFDFQWPQPDKPMFFYVTQGQEEIA
SSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLY
QEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKA
LSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMSTAMYDAR
EAMIPGSVYDRSSTGRPSNMYFQTHDQVGMIGTGPNPMGSMNIPIPFNLVMPPMPPPGYL
GQVNGPAAGRGAPKGKTGGRGGRQRNRGTGNHGSGQANMPGSQASQDLVSQPFSQGPLTQ
GYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQMDVALSQDSTYQGERAYQHGVTGLSQ
Y
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcgcagacgctcaccttcctggacacggaggaa
gcggagctgctcggggccgacacgcagggctccgagttcgagttcaccgacttcacactg
cccagccagacccaaactcagggccagacccagagtcaactcgacaaccaggtgaatggg
cctgatggtgttctgcccaatggagaagatgcagtggtgaagaccagccagcttctggcc
gagctgaactttgaggaggatgaggaagatacttactacactaaagatctgccggtgcat
gcctgcagctactgtggcatccatgatccagcatgtgtggtctattgcaacaccagcaag
aaatggttctgcaacggccgcggtaacacctctggcagtcatattgtgaaccacttggtg
agggccaaatgtaaggaggtgacgctgcataaggacggaccgctgggagagacggttctg
gagtgctataactgcggctgccgtaatgtcttcctgctcggcttcatcccggctaaagcc
gactctgttgtggtgcttctgtgcaggcagccgtgtgccagtcagagcagtctgaaggac
attaattgggacagctctcagtggcagcccctcatccaggaccgctgcttcctgtcctgg
ctggtgaagatcccgtctgaacaggagcagctgagggcccgtcagatcacagcacagcag
atcaataaactcgaggagctctggaaggaaaacccaacagcgaccctggaagatttggag
aaacctggagtggatgaggaacctcagcacgttctgctgcgatacgaagatgcctatcag
taccagaacatctttgggccgctggtcaaactagaggctgattatgacaagaaactcaaa
gagtcccaatgaagatgcaatagtactgatatgatgatgattgcgttagtactgaataaa
aagcggatagcttatttcactctgcccaagacggattcaggtgacatgcgactgatgcaa
ggagacgagatctgtctgcggtataagggagacatggctccactgtggaaagggattgga
cacgtcatcaaagtcccggacaattatggagatgaaatcgccatcgagctacgcagcagt
gctggtgcacctgtggaggtgccgcataacttccaggtggactttgtctggaagtcgaca
tcttttgaccgcatgcagagcgccctgaagacgtttgctgtggacgagacctctgtgtcc
ggatacatctatcacaagctgctgggtcacgaggtggaggatgttatcatcaaatgccag
ctgcccaaacgcttcactgcgcaaggcctgccagacctcaaccactcgcaggtttatgct
gtgaagacggtgctgcagcgacccctcagtctgatccaggggcctccaggaaccggcaag
actgtcacctctgccaccatcgtctaccatctggccagacagggcaatggtccggtgctg
gtttgtgctccgagtaacatcgcagtggatcagctgacagagaagatccatcagacgggg
ctgaaggtggttcgtctgtgtgctaagagtcgtgaggccatcgattcccctgtgtctttc
ctggctctgcacaatcagatccgcaacatggacagcatgccagagaatattaagctgatt
ctggtgggtgaccactgtcagctgggtcctgtggtcatgtgcaagaaggcagctaaagca
ggtctgtctcagtctctgtttgagaggctggtggtcctgggcatcagacccatccgtctg
caggtgcagtaccgcatgcacccggccctcagtgcattcccgtcaaacatcttctacgag
ggctctctgcaaaacggggtcaccgccgccgatcgcatcaggaaaggctttgacttccag
tggcctcagcccgataagcccatgtttttctatgtaactcaaggtcaggaggagatcgca
agctctggcacctcctatctcaacaggactgaggctgctaatgtggagaagatcaccacc
cgtctgctgaaggccggagccaaacccgaccagatcggcatcattacaccatacgagggc
cagcgctcttacctggtgcagtacatgcagttcagcggctcactgcacaccaaactatac
caggaggtggagatcgccagcgtggatgcgttccagggcagagagaaggacttcatcatc
ctgtcttgtgtcagagctaacgagcaccagggcatcggcttcctgaatgacccacgacgt
ctcaatgtggcgctaaccagagccagatatggcgtgatcattgtgggcaatcctaaggct
ctgtccaagcagcctctgtggaaccacctgctgaactactacaaggagcagaaggttctg
gtggaaggaccgctgaacaacctgagagagagcctcatgcagttcagcaaaccacgcaag
ctggtcaacaccatcaaccctggagcccgtttcatgagtaccgccatgtatgacgcgaga
gaggccatgattcctggatccgtgtatgatcgcagcagcaccgggcgtccatctaatatg
tacttccagacccatgaccaggtcggcatgatcgggactgggccgaacccgatgggctcc
atgaacatccccatcccattcaatctggtcatgcctcccatgcctccacctgggtacctg
ggccaggtgaacggacctgctgctggtcgtggtgctcctaaaggtaagaccgggggtcgt
ggaggtcgtcagaggaaccgtggcaccggtaatcacggcagcgggcaggccaacatgcca
ggcagccaggccagtcaggacctggtgtcccagcccttctctcagggtccactgacccag
ggctacatcaccatgagccagccgtcacagatgagccagcctggactgtcccagcctgag
ctctcacaggacagctacctgggtgatgagttcaaatcccagatggacgtggcgctttcc
caggattccacctaccagggcgaacgggcatatcaacacggagtgactggactctcacag
tactag
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