Sinocyclocheilus rhinocerous: 107758192
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Entry
107758192 CDS
T04916
Name
(RefSeq) helicase with zinc finger domain 2-like
KO
K25165
3'-5' exoribonuclease HELZ2 [EC:
3.1.13.1
5.6.2.6
]
Organism
srx
Sinocyclocheilus rhinocerous
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srx03019
]
107758192
Enzymes [BR:
srx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
107758192
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107758192
Messenger RNA biogenesis [BR:
srx03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107758192
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
RNB
AAA_19
AAA_30
ResIII
UvrD-helicase
AAA_22
SLFN-g3_helicase
UvrD_C
PhoH
nSTAND3
AAA_16
UvrD_C_2
CSD2
DEAD
Helicase_RecD
OB_Dis3
AAA_24
SRP54
ATPase_2
Rad60-SLD_2
zf-C2H2_jaz
Motif
Other DBs
NCBI-GeneID:
107758192
NCBI-ProteinID:
XP_016431351
LinkDB
All DBs
Position
Unknown
AA seq
2653 aa
AA seq
DB search
MALAGNHNFLQTLKTRFSLCVRCNKCCKKHNEISYSLNQVIHDCSEDILLIKRKRKNSVW
RPVAHRPGRPRPGKYVVCQYYTKETGCKQHGSRCTFARSSEEAAIWNVMKHEKLTIPKIV
NMTKQNQRTPQSKSRRKGGQFACTLCQVHFPKAEKLMNHCFTVKHRRLIFDETYQTWKYR
DPPPTYKDLKLCGRSLICEYGDNCTKAHSQEELREWQKRIKASRKRARDAAEMGLLSYQD
KLLEEYRHSNDKKIIVSDTLPDVSISCDTDIDSVYVRKKGIQCTWNFIIISKEPLEVIAL
LRRELGATFSLSKDPHEERTYSTSAWFKKNQTEYEIPVFFKSDHPGLYEQWVVFDFNTRP
VLRQKIKVRVGEDECKGTSVTTPAPEILLEKQESARNLEPWNEESLEIIPFVEREEAERE
LINRYKLIMIDEMNSVINRDNYKHSMHNFLYQEQKVEGELLTRLNLRGTAQLQNCLSDDR
FGLKCAYPGTLLAAVPLSHTLTPDAPQGFIVKRHTIRSLVHVVKNNEYLGPIYEAEFLKD
AATETQLLLQLSKQCCTDLNLQNGQQCEMEVQFQLNRLWFCEMHKAIDDLPNLDKVLPNL
KNSKFCISSQSDTGELNEKQQAAMNFVLGVTDNRCSIPPLLIYGPFGTGKTRTLAKMIQA
LVQQPQNKILICTHTNSSADLYVKGHFHEYAAVHHEAKPLRIKAKESNPRSTDTITLQYC
HLSRDSNQFEFPDKAVLDSTRIIITTTAVARFFHDMKLTENYFSHILIDEASQMLECEAL
MALGLAGKNTRVVLAGDHMQMGPKLFSVKQDKCSEHTLLNRLFYYYQAENSDGAKQSRII
FNENYRSTKDIVDFVSTHFYVGKSDVIKASGGVPPHPHQHALQFHHVRGECCLDPTSMSW
FNPAQVLSVVDIVQYILEQWPQEWDGKDPESICVLSQGRQVFEIRQRLRQLGLPRFTVEN
AENVQGKQFRVIVISTVHTKDSLLEMDRTCLEFFNDTRVLNTVMTRAQSQIFVVGDVAAL
SCQQFGTCWRLWRSYIEDCVNKGSAHNFTLDSLKQDLLEISELCRSEDEESSDSESTTSE
IPDTEDPILQELLDESKDINVPLTEEGLFPVFQHEQFVSSVSNQIAEVEEEQLLTNSIIR
KHCELVIEYYDRGYARPLNEPTLRIDIKGRKNIGQAFPGDKVTVEILSETSNPPMGRVIS
ILESADTVKEFVCTIERYDNQVMTPINKCITKIFTPFSKDKPDHVAVRNPENRKVKRFIK
INEEVRRKYIFIVRVLMWRKTGRIPLGTVVEVFPKITTLDNGLNILNIEYQLRRTFSSSL
RSQMQDIQGLNSFNKGRRDFRMLPTFTIDAADSQDLDDAISVRDLGECYEIGVHISDVAS
FVAKDSELDKYARQLCTTFYPSGKEPIHMFPKELSTNFFSLIPNQDRRAISLIIQVDTKT
HCIKESSFWKSVIRSKKKFSYDEAEDIIENHQNSDQLEICLVKAWTFAEVHRRLRKQDDC
YYKQPDEDVTLGRRQSHLMVEEIMIMFNHMAAERLLLDETTRSITPVRCQDRPNSEKLTD
LFDKNASLIPLSVHFSSQVHECVSHELNNQGLIHRRAMTNPQACISDSETFPILKSVLRC
LKTAAEQENIYKIIDFIATDEIHPQLLPFAVAFRRLFHKSCILRSNSTHVSRIGHYDLDL
DSYTWASSPIRRYTDVIVQRLLHSVIGKTNVRYTAHDIDLSCMEFSRKNDQQSAYERKSN
ALRFALQLSTQSERKVAYIVELNASGTNFRLSFPLNRTSISENLDIMYRDLQLADQPEFD
EANNCMILKWVRRIYSFSNPHILAEVKQQNPNSVMAYVSTKTWKCLTAALREENWDRFFP
LIEELDVSSRIHARQFNERLRNAKSSEKSDPMHAEHYAELSMRIKPGEAVEVQLGTATVR
GLMTPAIQLFVVHPKFEICLEHVRDPIKCFSKYAFHSSRNSYKTYMDYQGIWKPMCEMES
ASNAVAENESILIEDAALKWENSSEKKLQGYFLLPLDKKSQWSIECDLKNSVLCIRTKLH
QSQSSPSQCTALMDISSITWMAHGIITKVKETGSKELKNLQIDFEINDMPMTKIPEAIFG
ERTRFTLELIPKLLPDVRKENAISSLTKANQLVKTIAIGGRINSEGGTKFSSQMPARFEI
DNYLPSGFSHLNNSQCKAIREALANPFTLIQGPPGTGKTVVGVHIVYWLFKNIQKRPASN
SQKTRAVLYSGPSNKSVDVVAGHLLKLRNQLRPLRVYSNQMEMLEFPYPGCNLKQSRNSK
RGEKPNTELSSIALHHLIRKDGNPFSTQILAFDLKIGRGDELTKEEKKFYRETLQKARKH
ELLRHDVILCTCTAASHPALADALDFKQIIIDECAMATEPEAFIPLVAHKPEQIVLLGDH
MQLQPVIHCDVVERLGMSKSLFERYMEKALLLDTQYRMQEDICAFPSKEFYKGKLKTGTS
PKPSLFLSKSRKTCIVFGHVEGKEKSLVVRTERGNENSKANVEEAKEVVRIAILLTEAGI
NTKDIAILTPYNAQVASINELLFDKGIRDITVNTIMRSQGSEWKYVIISTVRSCPESEIE
KQPTKSWIMKQLGFIMDPHQVNVGITRAQEGLCIIGNENLLRCSVLWRGLLDHYKEKGCV
VNPARNIQVKKNH
NT seq
7962 nt
NT seq
+upstream
nt +downstream
nt
atggctcttgcaggaaatcataattttcttcaaacgttaaaaacgaggttcagtctgtgt
gtcagatgtaataaatgctgtaaaaaacacaatgagatttcatactcacttaaccaggtc
atccatgactgttccgaagacatcttgctgatcaagcggaaacgtaaaaattcagtgtgg
aggcctgttgcccaccggccaggccgtcccagacctggcaagtatgttgtttgtcagtac
tacactaaagaaactggatgcaagcagcatggaagtagatgtacctttgctaggagctca
gaggaagcagcaatatggaacgtcatgaagcatgaaaaactgacaattcctaagattgtg
aatatgacaaaacaaaatcaaaggacaccacagtcaaagtctcgaaggaaaggagggcag
tttgcctgcacattatgtcaagtccacttcccgaaagctgagaaactgatgaaccactgt
ttcactgtgaagcacaggagactgatctttgatgagacctatcagacttggaagtaccgt
gatccgccaccaacatacaaggacctgaaattgtgtggaagatccctaatatgcgagtat
ggtgataactgcacaaaggcgcacagtcaagaggaacttcgtgaatggcaaaaaagaatc
aaggcttcacgaaaaagagccagagatgcagccgagatgggtctactgtcctatcaggac
aagcttttggaggaatacagacacagcaacgacaagaaaattattgtcagcgacaccctt
cctgatgtttctatcagctgtgacacagatatagacagtgtgtatgtaaggaaaaaggga
attcaatgtacatggaattttatcattatttctaaggaacctctagaagttattgcttta
ctcagaagggagctgggggcgacattcagcctcagtaaagacccccatgaggaacggaca
tattccactagtgcttggtttaaaaagaaccaaaccgagtatgaaatcccagtgttcttc
aaatctgaccatccaggcttgtatgagcagtgggtagtgtttgacttcaacacgagaccc
gtactacgacaaaaaatcaaggtcagagttggagaggatgagtgtaagggaacatcagtc
acgaccccagcacctgagattctgctagaaaaacaagagtctgctaggaatcttgagccc
tggaatgaggaaagcctggaaatcattccttttgttgaaagagaagaggcagagagagag
ctgataaacagatacaagctcatcatgatagatgagatgaacagtgtgattaaccgtgac
aactacaaacacagcatgcacaattttttatatcaggagcaaaaggtcgaaggtgaactg
cttaccaggctgaatctacgagggactgcgcagttgcaaaattgcctgtctgatgacagg
tttggtttaaaatgtgcttatcccgggacacttcttgctgctgtgcctctgtctcacaca
ctcactcctgatgctcctcaaggtttcatagtgaaaagacacacaatcagatctcttgtt
catgttgtgaaaaacaacgaatatcttggacctatttatgaggctgaatttctgaaagac
gctgccacagagacacaattacttttgcagctttccaaacaatgctgcactgatttgaac
ctgcagaatggacagcagtgtgagatggaagtccagttccaactaaatcgtctctggttc
tgtgagatgcacaaggccattgatgatctccccaacttagacaaagtcttgcctaatctg
aaaaacagcaagttctgtatttcttcccagtcagatacaggagagttaaatgaaaagcag
caagcagcaatgaactttgttctgggtgtaacagacaacagatgcagcatcccacctttg
ttgatttatggaccttttggaacagggaaaactcgaacccttgccaagatgatccaggct
cttgtgcagcaaccacagaacaaaatcctgatttgcacacacacaaacagttctgctgat
ctctatgtaaaaggtcattttcatgaatatgcagctgttcatcacgaagccaaacctttg
agaatcaaggcaaaggaaagcaatcccagatctactgataccatcacactacagtactgc
catttatccagagatagcaatcagtttgagtttcctgataaagctgttttagattccaca
agaatcatcataacaacaactgctgtggctcgtttcttccatgacatgaagctcactgaa
aactacttcagccacattctgattgatgaagcttctcagatgttggagtgtgaggctctc
atggcactgggcttagcaggtaaaaatacacgtgttgttttagcaggagaccacatgcag
atgggacccaagctcttctctgtgaaacaagacaaatgctcagaacatactctgctcaat
cgcctcttctattactatcaagctgaaaacagtgatggcgccaaacaaagccgaatcatt
ttcaatgaaaactaccgttccacaaaggacattgtggattttgtatcaacacatttttat
gtgggaaagagtgatgtgatcaaggctagtggaggtgtgcctcctcatccacaccaacac
gccttgcagttccatcatgtaagaggagaatgctgtttggacccaacaagcatgtcctgg
ttcaatccagcacaagttctaagtgtcgttgacattgtgcaatatatattggagcaatgg
cctcaggagtgggatggtaaagatccggaatcaatctgtgtactttctcaaggcagacag
gtgtttgagataaggcaaagactgcgtcagcttggactgccacgtttcactgtggagaat
gccgaaaatgtgcaaggaaaacagttcagagtaatagtgatttccactgtgcacaccaag
gacagcttattggagatggaccggacctgtcttgaatttttcaatgacacacgagtgctg
aacacagttatgacaagagcccagtctcaaatatttgttgttggagatgtagctgcactt
tcttgccaacagttcggtacatgctggagactatggagatcgtacatagaggattgcgtc
aacaagggaagtgcccataactttaccttggattctttgaaacaagatctccttgagata
tctgagctctgcagaagtgaggatgaagagagcagcgatagtgaatcaactacatctgaa
ataccagacacagaagacccaatacttcaagagcttcttgatgagagcaaagacatcaac
gttccattgacagaggagggcttgtttccagtttttcaacatgagcaatttgttagtagt
gttagcaaccaaattgcagaagtagaagaagagcaactgttgactaactctatcatacgc
aaacactgtgagctggtcatagagtattatgaccgtggctatgcaagaccacttaatgag
cccactctgagaatcgatatcaagggtagaaaaaatattggacaggcattccctggagac
aaggtaacagtggagatcctgagtgagacatcaaatcctcccatgggaagagtgatcagc
atccttgaaagtgcggatactgtcaaagaatttgtctgcaccattgaaagatatgacaat
caggtgatgacgcctatcaacaaatgcatcaccaaaattttcacaccattttcaaaggac
aaaccagaccacgttgctgtaagaaatccagagaaccgcaaagtaaagcgtttcatcaaa
ataaatgaagaagtacgtagaaaatatatcttcattgtcagagtccttatgtggagaaag
actggcagaatccccttggggacagttgtggaagtgtttcccaaaatcacaactttagat
aatggactgaatatactcaacatagagtaccagttgaggagaacattttcgtcatctttg
agaagtcagatgcaagacattcaaggtctcaattcatttaataaaggacgaagagatttt
cgcatgctcccaacattcaccattgatgctgctgattcacaagaccttgatgatgcaatc
agtgtacgggatttaggtgaatgctatgaaataggagttcacatttctgatgttgcaagt
tttgtggctaaagacagtgaactggacaaatatgcaagacagctgtgtactacattctat
cccagtgggaaggagccaatacacatgttccctaaagaactgagtaccaatttcttcagt
ttaatccctaaccaagacagacgagccatctccttgataattcaagtagatactaagaca
cactgcataaaggaaagttcattttggaagtctgtcattcgctccaagaagaaattttcc
tatgatgaagctgaggacatcattgaaaatcatcagaattctgaccagcttgaaatctgc
cttgtgaaagcatggacctttgctgaggtccacaggagattgagaaaacaggacgactgc
tactacaaacagccagatgaagacgtgactctgggaagaagacaatctcacctaatggtg
gaagagattatgatcatgtttaatcacatggctgctgaacgtcttctgcttgatgaaaca
acaaggagcataactccagtgaggtgccaggacaggccaaacagtgaaaagcttactgac
ctttttgacaaaaatgcctccttgattccactttctgttcacttctccagtcaagttcat
gagtgtgtgtctcatgaactgaataaccaaggtttgatccaccgcagagccatgacaaac
cctcaggcttgcatttctgattctgaaaccttccccatattaaaatctgttttgagatgc
ctgaagacagcagcagagcaggaaaatatctacaaaataattgactttattgcaactgat
gagattcacccccaacttctcccttttgctgttgcatttaggagactgtttcacaaatca
tgtattctgcgctcaaactcaacacatgtctcaagaattgggcactatgatttagatctt
gacagctatacatgggcgtcatctccaatccgccgatatacagatgtcattgtgcagcgt
cttcttcattctgtgattggcaagacaaatgttaggtacacagctcatgacattgacctg
tcttgtatggaattttccaggaaaaacgaccaacagtcagcatatgagaggaaatctaat
gctctacgttttgcattacaactgtcgacccaaagcgaaaggaaggtggcctacattgtg
gaactcaatgcatcagggacaaacttcagattatccttcccacttaacagaacctcaata
tcagaaaacttagacattatgtacagggatcttcagttggcagatcaaccagagtttgat
gaagcaaacaactgcatgatcttgaaatgggtgcgaaggatatattcattttccaatcct
cacatccttgctgaagtgaaacaacaaaatccaaactcagtcatggcctatgtctctaca
aagacctggaaatgcctaacagctgctcttagagaggaaaattgggacagattttttccc
ctgattgaggagcttgacgtcagctcaagaatccatgcaagacaattcaatgaaagactg
agaaatgctaaaagttcagaaaaatctgatcccatgcatgctgagcattatgccgaactg
tcgatgagaataaagccaggtgaggcagtcgaagtacagctaggtacagccacggtacga
ggactaatgacaccagcaattcagctgtttgttgtgcatccaaaatttgagatttgtttg
gagcatgtgagagatccaatcaagtgtttttcaaaatatgcattccactcatccaggaat
tcatacaagacatacatggattatcagggaatatggaaacccatgtgtgaaatggagtca
gcctccaatgctgttgctgaaaatgagagcattcttattgaagatgcagccctgaaatgg
gaaaactctagtgaaaagaagcttcaaggttactttcttctcccacttgacaaaaaatct
cagtggtccattgaatgtgaccttaagaacagtgtcctctgcattcgaactaagcttcat
caaagtcagagtagtccctctcagtgcacagctctcatggatatttcctctatcacttgg
atggcccatggcataattacaaaagttaaagaaacaggatccaaagaactgaagaatttg
caaattgattttgagattaacgacatgcccatgacaaaaattccagaagcgatatttggt
gagaggacaagatttactctggagctgattccaaagcttctgccagatgtacgcaaagaa
aatgcaattagtagtctcacaaaagctaaccagcttgtgaaaactatagccattggtgga
agaatcaactctgaaggaggaacaaaattttcgagccagatgccagccaggtttgagatt
gacaattatcttccttctgggttttcccatctaaacaacagtcagtgtaaagctataaga
gaggcactggccaacccattcactcttatccaaggcccaccaggcacaggaaaaactgtt
gttggtgtccatattgtgtactggttgttcaagaatattcaaaaacgtcctgcctccaat
tcacagaagacaagagctgttctttactctgggccttcaaataaatctgttgatgtcgta
gcaggtcatctcctaaaacttcgaaatcaacttagacctctcagagtctacagtaatcag
atggagatgttggaatttccttacccaggctgcaatctgaagcagtcacgcaattcaaaa
agaggcgaaaaacccaacacagagcttagctccattgcacttcaccacctgattcgaaaa
gatggcaacccattctccacacaaatactcgcttttgatctgaaaattggaagaggagat
gaactcactaaagaagaaaagaaattctacagagaaaccctccaaaaggctcgaaaacat
gaattactgcggcatgatgtcatcttgtgcacttgcacagcagcctcacatcctgcctta
gctgatgccctcgacttcaaacagatcatcattgatgaatgtgccatggcaactgaacct
gaagcctttattccactagtggctcataagcctgagcagattgttcttctgggcgatcat
atgcagctgcaacctgtaatccactgtgatgtggtggagcgattgggaatgagcaaatct
ctttttgaacgttacatggagaaagcactcttgcttgacactcagtacagaatgcaagaa
gacatttgtgcatttccatctaaggagttctataaaggaaagttaaaaactggaacatca
cccaaaccaagtctcttcctaagtaaatcaaggaaaacatgcattgtctttggtcatgtt
gaaggaaaggagaaaagtctggtggtccggactgaacgggggaatgaaaattcaaaggca
aacgtggaagaggcaaaagaagtggtgcggattgccattcttttgactgaggctgggata
aacacaaaggacattgccattctcacaccatacaatgctcaagtggcaagtattaatgag
ctcctgtttgataagggtatacgtgatatcacagtcaacaccatcatgaggagtcaagga
agtgaatggaaatatgtcatcatatcaactgtgcgctcttgtcccgaatctgaaatagaa
aaacaaccaaccaaatcctggattatgaaacaacttggattcatcatggacccacaccaa
gttaacgtgggcattaccagggcacaagaaggcctgtgcatcattggtaatgagaacttg
ctgcggtgcagtgtgttgtggagaggacttctggatcattataaggagaaaggatgtgta
gtgaatcccgcccggaacatccaggttaaaaaaaaccactag
DBGET
integrated database retrieval system
