Serratia plymuthica S13: M621_10085
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Entry
M621_10085 CDS
T02716
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sry
Serratia plymuthica S13
Pathway
sry03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sry00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M621_10085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sry03400
]
M621_10085
Enzymes [BR:
sry01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M621_10085
DNA repair and recombination proteins [BR:
sry03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M621_10085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
DUF6007
Motif
Other DBs
NCBI-ProteinID:
AGP44109
UniProt:
S4YHB4
LinkDB
All DBs
Position
complement(2097866..2101345)
Genome browser
AA seq
1159 aa
AA seq
DB search
MSTSDNRNRSASSSSRYSLPDRAGDLRQLGQLTGAACAVECAEIVERHNGPVMLIAPDMQ
NALRLRDEIQQFTDQMVTTLPDWETLPYDSFSPHQEIISARLSSLYHLPTMVRGVIILPV
NTLMQRVCPHEFLHGHALVMKKGQRLSREKLRAQLEQAGYRSVDQVMEHGEFATRGALLD
LYPMGSEEPYRIDFFDDEIDSLRIFDVDTQRTLSEVEAINLLPAHEFPTDKTAIELFRSQ
WREQFEVRRDAEHIYQQVSKGTWPAGIEYWQPLFFSQPLPSLFSYLPANTLIVNTGNLES
AAERFWLDVNQRYESRRVDPMRPLLAPDNLWLRVDALFGELKAWPRMALKTEALPAKAGN
TNLDYRALPDLAVQAQNKAPLDQLRRFTESFDGSVIFSVESEGRRETLQDLLGRIKLGTS
LIQHLDQAEPAGRYMMVGASERGFLDGMRNRALICESDLLGERVSRRRQDNRRTINTDTL
IRNLAELHPGQPVVHLEHGVGRYVGLTTLEAGGIKAEYLILSYSGEDKLYVPVSSLHLIS
RYAGGADENAPLHKLGGDAWTRARQKAAERVRDVAAELLDIYAQRAAKSGFAFKHNREQY
QLFCQSFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENGK
QVAVLVPTTLLAQQHFDNFRDRFATWPIRIEMMSRFRSAKEQQQIMDDAVDGKVDIIIGT
HKLLQSDLRWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM
RDLSIIATPPARRLAVKTFVREYDSLVVREAILREVLRGGQVYYLYNDVENIEKAAEKLA
ELVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADR
FGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSTDAHKRLEAIASLEDLGAGFALATHDL
EIRGAGELLGEDQSGQMTTVGFSLYMELLESAVDALKNGREPSLEDLTSNQTEVELRMPA
LLPDDFIPDVNTRLSFYKRIASAKNDGELEELKVELIDRFGLLPDPARNLLQSAALRQHA
QKLGIKRIEGNERGGFIEFGEKNRVDPGYLIGLLQSNPQIYRLDGPTKLKFMLDLTDRQK
RLKFTEELLAAFREHTLAA
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgagcacctccgataaccgtaaccgttctgcatcgtcatcctcccgttattccctgccc
gatcgcgcaggcgatttgcgccagttggggcaactaaccggcgcggcctgcgccgtggag
tgcgccgagatcgtcgaacgtcataacgggccagtgatgctgatcgccccggacatgcag
aacgccctgcggctgcgcgacgaaatccagcagtttaccgatcaaatggtgaccacgctg
cccgactgggaaaccctgccctacgacagtttctcgccgcaccaggaaattatctcagcc
cgtctgtcgagcctgtaccacctgccgaccatggtgcgcggcgtcatcattctgccggtc
aataccctgatgcagcgcgtctgtccgcacgaattcctgcatggccacgcgctggtgatg
aaaaagggccagcgcctgtcgcgcgaaaaactgcgcgcccagttggagcaagccggttac
cgcagcgtcgatcaggtgatggagcacggcgagtttgccacccgcggcgcgctgctcgat
ctgtacccgatgggcagcgaagaaccttaccgcatcgatttcttcgacgatgaaatcgac
agcctgcgcatctttgacgtcgacacccagcgcacgctgagcgaagtcgaggccatcaac
ctgctgccggcccatgaattcccgaccgacaaaaccgccatcgagctgtttcgcagccag
tggcgcgagcagtttgaggtgcgccgcgacgccgaacatatttaccagcaggtgagcaaa
ggcacctggccggccggcatcgaatactggcaaccgctgttcttcagccagccgctgccg
tcgctgttcagctacctgccggccaacacgctgatcgtcaataccggcaacctggagagc
gccgccgagcgcttctggctggacgttaaccagcgttacgaaagccgccgcgtcgatccg
atgcgcccgctgctggcaccggacaacctgtggctgcgggttgacgcgctgtttggcgaa
ttgaaagcctggccgcgcatggcactcaaaaccgaagcgctgcctgccaaagccggcaac
accaacctggactatcgcgcgctgccggatctggcggtgcaagcccaaaataaagcgccg
ctggaccagttgcgccgctttacagaaagctttgacggcagcgtgattttctcggtcgaa
agcgagggccgccgcgaaacgctgcaagacctgctcggccgcatcaaactcggcacgtca
ttgattcaacatctcgatcaggcggaaccggccggccgctatatgatggtcggcgcctcg
gaacgcggtttcctcgacggcatgcgcaaccgggcgctgatctgcgaaagcgatctgctc
ggcgaacgcgtcagccgccgccgacaggacaatcgccgcaccatcaataccgataccctg
atccgcaacctggcggagctgcaccccggccagccggtggtgcatctggagcacggcgtc
gggcgttacgttggcctgacgacgctggaagccggcggcatcaaggccgaatacctgatc
ctgtcctactccggtgaagacaaactctatgtgccggtctcttcgctgcacctgatcagc
cgctatgccggtggcgcagatgaaaacgcgccgctgcacaagctgggcggtgacgcctgg
acgcgcgcgcggcagaaagccgcggaacgggtgcgggacgtagcggccgagctgctggat
atttacgcccagcgcgccgccaaatccggcttcgccttcaaacacaaccgcgaacagtat
cagctgttctgtcaaagcttcccgtttgaaaccacccctgaccaggaacaggcaatcaac
gccgtgctgagcgacatgtgccagccgctggcgatggacaggctggtgtgcggcgacgtc
ggcttcggcaaaaccgaagtggcgatgcgcgcggccttcctggcggtggaaaacggcaag
caggtggcagtgctggtgcccactacgctgttggcgcagcagcacttcgacaacttccgc
gatcgcttcgccacctggccgattcgcatcgagatgatgtcgcgtttccgcagcgccaaa
gagcagcaacagatcatggacgacgccgtcgacggcaaagtggacattattatcggcacc
cacaaactgttgcagagcgatctgcgctggaaagatttggggctgctgatcgtcgatgaa
gaacaccgtttcggcgtgcgccacaaagaacgcatcaaggcgatgcgcgccgatgtggat
atcctgacgctaaccgccacgccgatcccgcgtacgctgaatatggcgatgagcggcatg
cgcgacctgtcgattatcgcgaccccaccggcccgccgcctggcggtgaaaaccttcgtg
cgcgagtacgacagcctggtggttcgcgaggctatcctgcgtgaagtgctgcgcggcggc
caggtttactatctgtacaacgacgtggagaacatcgagaaagccgcggagaaactggct
gagctggtgccggaagcgcgtatcgccatcggccacggccagatgcgcgagcgcgatctg
gaacgggtgatgaacgatttccaccaccagcgttttaacgtgctggtctgtaccaccatt
atcgaaaccggcatcgatattcccagcgccaataccattatcatcgagcgcgccgatcgc
ttcgggctggcgcagttgcatcagttgcgtggccgcgtaggccgttcgcaccatcaggcc
tacgcctatctgctgacgccgaatccgaaggccatgagcaccgacgcgcacaaacggctg
gaagccatcgcttcgctcgaagatctcggcgcaggcttcgctttggcgacccatgacctg
gaaatccgcggcgcgggcgagctgctgggtgaagatcaaagcggccagatgaccaccgtc
ggcttctcgctgtacatggagctgctggaaagcgctgtcgacgcattgaaaaacgggcgc
gagccgtcgctggaagatctcaccagcaaccaaaccgaagtggagctgcgcatgccggcc
ctgctgccggacgattttatcccggacgtgaacacccgtctgtcgttctataaacgtatc
gccagcgcgaaaaacgacggcgaactggaagaactgaaggtggagctgattgaccgcttc
ggcctgctgcccgatccggcgcgcaacctgttgcaaagcgcggcgctgcgccaacatgcg
cagaaactggggattaagcgtatcgaagggaacgagcgcggtggttttatcgagtttggc
gagaagaatcgggtcgatccgggttacctgattggcctgctgcagagcaatccgcaaatt
tatcgcctggatgggccgaccaagctgaagttcatgctggacctgaccgatcgtcaaaag
cgcctgaagttcaccgaggagctcttggccgcattccgcgagcacacgttggcggcctga
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