Serratia rubidaea: AXX16_1522
Help
Entry
AXX16_1522 CDS
T04417
Name
(GenBank) Exodeoxyribonuclease V alpha chain
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
srz
Serratia rubidaea
Pathway
srz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
srz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AXX16_1522
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srz03400
]
AXX16_1522
Enzymes [BR:
srz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AXX16_1522
DNA repair and recombination proteins [BR:
srz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AXX16_1522
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecD_N
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
Helicase_RecD
AAA_11
SH3_13
AAA_22
UvrD-helicase
SLFN-g3_helicase
PhoH
nSTAND3
UvrD_C
AAA_16
CbiA
AAA_28
T2SSE
MdcG_N
ABC_tran
FtsK_SpoIIIE
SRP54
TrwB_AAD_bind
MukB
MeaB
AAA
NTPase_1
ATPase
Motif
Other DBs
NCBI-ProteinID:
AML57241
LinkDB
All DBs
Position
1648075..1649940
Genome browser
AA seq
621 aa
AA seq
DB search
MMQLLQQAVALGVLRPLDVQFAQVVAGPERPDMLLAAACLSAEAGAGHVCLQLEQLLPET
LFGARQPELAQAVWQAAGQPDVEAWRALLLSSSAVSDGSLPTPLVLQQQRLYLQRMWQSE
GEVADFIGSEDTPQPIDPQRLRPILDRLFGEAEATPDWQKIAAAVAATRRIAVISGGPGT
GKTTTVAKLLAALVQLADGERLRIQLAAPTGKAAARLTESLGSASRRLGLTPQQLSLFPS
EAATLHRLLGAQPNSQRMRYHRGNPLHLDVLVVDEASMVDLPMMARLIAALPAHARVIFL
GDRDQLASVEAGAVLGDICRFAEQGYSEARAAQLSQLTGCVLQGQPAQAAAAVRDSLCLL
RKSYRFDANSGIGQLAFAVNAGDVRGARAALDGRFDDVAGYPLAETADYQALLDACVAGY
RDYLTQVAAGVDAQQVLDAFGRFQVLCALREGPFGVSGLNERIETGLQRAGLIRRASGAA
GRWYRGRPVMIGRNDSALGLFNGDIGIALPDAAGELRVHFQLPDGSIKSVQPSRLPAHET
AYAMTVHKSQGSEFDHTVLVLPNHYLPVLTRELVYTAITRARQRLSLYAADKVLMSAVRT
PTQRRSGLAERLLLASDEQGR
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgatgcagctactacaacaggcggtcgcgcttggcgtgctgcgtccgttggacgtgcag
ttcgcccaggtggtcgccgggccggaacggccggatatgttgctggcggcggcctgcctc
agcgcggaagccggtgccggccacgtctgtctgcagctggagcaactgctgccggagaca
ttattcggcgcccgccagcctgagctggcgcaggcggtctggcaggccgccggtcagccg
gacgttgaggcgtggcgagccctgctgctgtcgtcatcggcggtcagcgacggcagcttg
ccgacgccgctggtgctgcagcagcagcgtctctacctgcagcgcatgtggcaaagcgaa
ggcgaggtggcggactttatcggcagcgaggatacgccgcagcctatcgacccacagcgt
ttacggccgattctggatcgcctgtttggcgaggcggaagcgacgccggactggcagaaa
atcgccgccgccgttgccgctacgcggcgcattgcggtgatttccggcgggccgggcacc
ggcaaaaccaccacggtggcgaaactgctggcggcgctggtgcagctggccgatggtgaa
cggctgcgcattcagctcgccgcgccgaccgggaaagcggcggcgcgcctgaccgaatcg
ctcggcagcgccagccgccggctggggctgacgccgcagcagctgagcctgtttccttcc
gaagccgccacgctgcaccgcctgctgggcgcgcagccgaacagccagcgcatgcgttac
catcgcggtaacccgctgcatctggacgtgctggtggtggatgaggcgtcgatggtggat
ttaccgatgatggcgcggctgatcgccgccttgcccgcacatgccagagtgattttcctt
ggcgaccgcgatcaactggcctcggtggaggcgggcgcggtgctgggggatatttgccgc
tttgccgagcagggctacagcgaggcgcgtgcggcgcagctcagccaactgaccggctgc
gtgctgcagggacagccggcacaggcggctgcggcggtgcgcgacagtctgtgcctgctg
cgtaaaagctaccgttttgacgccaactcgggcattggacagctggcgttcgcggttaac
gccggcgatgtccggggcgcgcgtgcggcgctggacgggcgttttgacgacgtggccggc
tatccgctggcggagacggcggactatcaggcgctgctggatgcctgcgtggcgggctac
cgcgactacctgacgcaggtggccgccggcgttgatgcgcagcaggtgctggatgcgttc
gggcgttttcaggtgctgtgcgccctgcgggaaggcccgttcggcgtcagcgggctgaat
gagcgtatcgaaaccggcctgcagcgcgccggattgatccggcgtgcgtccggcgccgcg
gggcgttggtatcgggggcgtccggtgatgatcggccgcaacgacagcgcgctggggttg
tttaacggcgatatcggcattgccttgccggatgcggcaggggaattgcgcgttcacttt
caactgccggacggcagcatcaaatcagtgcagccaagccgcttaccggcgcatgaaacc
gcctatgcgatgacggtgcataaatcacagggatcggagtttgaccatacggtactggtg
ctgcccaaccattatctgccggtgctgacgcgggaactggtgtataccgccattacccgc
gcgcgtcagcggctgtcgctgtacgctgccgataaggttttgatgagcgccgtacgtacg
ccgacgcagcgccgcagcgggctggccgaacgcctgctgctggcgagcgatgaacagggg
cgctaa
DBGET
integrated database retrieval system
