Staphylococcus saccharolyticus: I6I31_05195
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Entry
I6I31_05195 CDS
T07353
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ssac
Staphylococcus saccharolyticus
Pathway
ssac03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ssac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I6I31_05195 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssac03400
]
I6I31_05195 (mfd)
Enzymes [BR:
ssac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I6I31_05195 (mfd)
DNA repair and recombination proteins [BR:
ssac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I6I31_05195 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
RecG_dom3_C
Glyco_hydro_115
UB2H
IstB_IS21
NPV_P10
Motif
Other DBs
NCBI-ProteinID:
QQB99227
LinkDB
All DBs
Position
1070492..1073995
Genome browser
AA seq
1167 aa
AA seq
DB search
MKSIITDYISEDKRFQELDEVFGQDTILVTGLSPSAKVTIIAEKYLKDHRQLLLVTNNLY
QADKIETDLLHYIDDSEVYKYPVQDIMTEEFSTQSPQLMSERVRTLTALAQGDKGLFIVP
LNGLKKWLTPEDMWKSHQMNLKVGEDIDVDKFLNRLVNMGYRRESVVSHIGEFSLRGGII
DIYPLVGSPVRIELFDTEIDSIRDFDVETQRSNDNLEQVEITTASDYIITDDVIQHLQKK
LKEAYEKTRPKIDKSVCNDLKETYESFKLFESTFFDHQLLRRLVAFMYETSSTIINYFQQ
DAIIVVDELNRIKDTEETLTTEVDDFISNLIESGNGFIGQGFMNYKSFETLLERRPVAYF
SLFTSTMQVPLQHIIKFSCKPVQQFYGQYDIMRSEFQRYVHNDYTIMVLVETETKVERIQ
SMLNEMHIPTVTDIHENIDSGQVVVMVGSLSEGFELPYMQLVIITEKELFKTKQKKQRKR
TKTISNAEKIKSYQDLNVGDYIVHVHHGIGRYLGVETLEVGDTHRDYIKLQYKGTDQLFV
PVDQMDQVQKYVASEDKSPRLNKLGGTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGY
QYGEDTVEQSAFEQDFPYELTPDQSKSIEEIKDDMQRERPMDRLLCGDVGYGKTEVAVRA
AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPVEIQLMSRFRTTKEIRQTREGLKS
GYVDIVVGTHKLLGKEIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPR
TLHMSMLGVRDLSIIETPPENRFPVQTYVLEQNTNFIKEAIERELSRDGQVFYLYNKVQS
IYEKREQLQMLMPDANIAVVHGQMTERDLEETMLSFINHKYDVLVTTTIIETGVDVPNAN
TLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNESAEERLQAIKEFTELGS
GFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGITEETPDAPEVEL
HLDAFLPAEYIQNEQAKIEIYKKLRKVESKEQLFDVKNELIDRFNDYPVEVERLLDIVEI
KIYALHAGITSIKDKGKSIGVYLSPKATENINGEELFKQTQPLGRAMKVGVQENAMHVTL
TKSKQWLDSLKFLVKSIEESMAIKDEV
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatcaataattacagattatattagtgaagataaacgttttcaggaactagatgaa
gtttttggtcaagatactattttagttacgggcttatccccatcagctaaagttacaatt
attgctgaaaagtatctcaaagatcatagacaattgttgctcgtaacaaacaatttatat
caagcagataaaatagaaacggatctattacattacattgatgattcagaagtttataag
taccctgtacaagatattatgactgaagaattttcaactcaaagtccacaattaatgagt
gaacgtgtgagaacgttgactgcgcttgcccaaggcgacaaagggttatttattgtgccc
ttaaatgggctgaaaaagtggttgacaccagaagatatgtggaaaagtcatcaaatgaac
ttaaaagttggagaagatattgatgtcgacaaatttttaaataggcttgtcaatatggga
tatcgacgtgaaagtgtcgtgtctcatataggtgaattctctctaagaggtggaattatc
gatatatatcctcttgttgggtcacctgttcgcattgaattatttgatacagaaattgat
tctattagagattttgatgttgaaacacaacggtctaatgacaatctcgaacaagtagaa
attacaacagctagtgattatattattacagatgacgtcattcagcacttgcagaaaaaa
ctgaaggaagcatatgaaaagacgcgacctaaaatagataaatcggtgtgtaatgattta
aaagaaacttatgaaagttttaagctatttgagtcaactttttttgaccatcaattatta
agacgtttagttgcatttatgtatgagacgtcttctactattatcaattattttcaacaa
gatgcgattatcgtagtagatgagttaaatcgtatcaaagatacagaagaaacattaaca
acagaagttgatgattttattagtaatttgattgaaagtggtaatggttttattgggcag
ggattcatgaactataaaagctttgaaacgttattagagcgtcggccagtcgcttatttc
tccttgtttacatcgacaatgcaagtaccgttacaacatattattaaattttcttgtaaa
cctgtacagcagttttatgggcagtatgacatcatgcgttcagaatttcaaagatatgtt
cataatgactacacaattatggtactagttgagactgaaacgaaagttgaacgtatacaa
tctatgttgaatgaaatgcatattccaacagttactgatattcatgaaaatattgacagt
ggtcaagtagtggtaatggtagggagtctgtctgaaggttttgaattaccttatatgcaa
ttggtcatcattactgagaaagaactatttaaaacgaagcaaaaaaaacaacgtaagcgt
acaaaaacaatttctaacgcagagaagattaagtcatatcaagatttaaatgtgggtgac
tatattgttcatgtacatcatggtataggtcgttatttaggtgttgaaacattagaagtt
ggagacacacatcgagattacattaaattacaatataaaggaacagatcaactatttgtt
cctgttgatcaaatggatcaggtccagaaatacgtagcttctgaagataaatcgccgaga
ttgaataaattaggtggtactgaatggaagaaaacaaaggctaaagttcaacaaagtgtt
gaagatattgctgatgaacttatcgatttatacaaagagcgcgaaatgtctgtgggttac
caatatggtgaagatacggtagagcagtcagcatttgagcaggattttccatatgaatta
acacctgatcaaagcaaatctattgaagaaattaaagatgatatgcaacgtgaacgtcct
atggaccgtttgctatgcggtgatgtaggttatggaaagacagaagttgctgttcgtgct
gcatttaaagctgtcatggaaggtaaacaagttgcttttctagttcctacaactatttta
gctcaacaacactatgagacactcatcgaacggatgcaagactttccagttgaaatccaa
ttaatgagtcgttttcgtactacgaaagaaataagacagacaagagaaggactaaaatct
gggtacgtagatatagtggtgggtacacataaattacttggtaaagagatacagtataaa
gatttgggtttacttattgtggacgaagaacaacgatttggtgtacgtcataaagaacga
attaaaacattgaaaaagaatgtagatgttctcactttaactgctacacctatacctaga
accttacacatgagcatgcttggagtacgtgatttgtctatcatagaaacgccacctgaa
aaccgctttccagttcaaacatatgtgttagaacaaaataccaattttattaaagaagct
atagaacgtgaattatcacgtgatggacaagtcttctatctttataataaggttcagtct
atttatgaaaaaagagaacagttacaaatgctaatgccagatgcaaacattgctgttgta
catggtcaaatgacggaacgtgatttagaagaaacaatgctcagttttattaaccataaa
tatgatgttcttgtaactaccactattattgaaacaggtgtagatgttccaaatgcaaat
acacttataattgaagaagcagaccgttttggattaagtcaactttatcaactaagagga
cgtgttggacgttcgagtcgtataggttatgcttacttcttgcatccagctaataaagtg
ttgaatgagagtgctgaagaacgtttacaagcgattaaagaattcactgaacttggctca
ggttttaaaattgccatgcgcgatttaaatattcgtggggcgggtaacttgctaggtaaa
caacagcacggctttattgattctgttggctttgatttatactcacaaatgttagaagaa
gctgtaaatgaaaagcgtggaattactgaagaaacacctgatgcacctgaagtagaacta
catttggatgcatttttacctgccgaatatattcaaaatgaacaagccaaaattgagatt
tataaaaaattacgtaaagttgaatctaaagaacaattatttgatgttaaaaatgaattg
attgatcgtttcaatgattatcctgtcgaagtagaacgtttactagatattgttgaaatt
aaaatttatgctttacatgcgggaattacttcaattaaagataaaggtaaatcaattggg
gtttacttatcacctaaagcaacagaaaatataaatggcgaagaattgtttaaacagaca
caacctcttggaagagcgatgaaggttggtgttcaagaaaatgcaatgcatgttacttta
acgaagtctaaacaatggttagacagcttgaaatttttagtgaaaagtattgaggaaagt
atggcgattaaagatgaagtctag
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integrated database retrieval system
