Sphingomonas sanguinis: KV697_08985
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Entry
KV697_08985 CDS
T09609
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ssag
Sphingomonas sanguinis
Pathway
ssag03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ssag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KV697_08985 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssag03400
]
KV697_08985 (ligD)
Enzymes [BR:
ssag01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KV697_08985 (ligD)
DNA repair and recombination proteins [BR:
ssag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KV697_08985 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
QXT37381
LinkDB
All DBs
Position
1932068..1934518
Genome browser
AA seq
816 aa
AA seq
DB search
MADPLERYNAKRDFTRTAEPAGTLAPGKGNSFIVQKHDATRLHWDFRLEVDGVLKSWAVT
RGPSLDPDEKRLAVRTEDHPLSYATFEGTIPAGEYGGGTVMLWDRGTWSPVAGKSAKDLE
DGHLHFILDGERMKGEWLLVRMKPRGKEKRENWLLRKVADAQAGGTDTLTDQALTSVSTG
RTMAQIAEGKAAKPKSTNTPKARPSKAKTKAKAKAGTMPEFQPPALCTLVDQVPAGNGWV
HEIKYDGYRALIAVGGGEARVFTRSGLDWSDKFPGIVAAAADLPVASALIDGEIVAFKDG
RPDFSTLKDAIGTTKPMSLFAFDLLSLDGEDVTGLPLVQRKERLRGVVPKGDEVIQFAEH
ITGSGEALFDKLCAEGLEGVVSKRADSRYPSARSRDWLKIKCLKRQEFVIVGWLPSDKAR
RGLKSLLLGVNRDGELAYVGKVGTGFTQDRMAELRTLLDARTRKTARVEAPRAMVRGAKW
VRPDLVAEIAFTETTPDGLLRHPSFIGLREDKPADQVVEERPAPGPSAKDSDIAITHPER
VIFPDSDLTKGDLADYVATIAPLMLPWVARRPVSLVRCPQGRARACFFQKHDAGSFGPHV
HSVPIREKDGGTEPYLYVEDAEGLRACIQMGSIEFHGWGSSIATLEQPDRMIFDLDPDPS
VTFADVKRAAVHIHDQLAELGLTSFAMLSGGKGVHVVVPLTPDAKWPAVSDFAERFAKAL
AQGDPDRFVAVATKAKRKGRIFIDWLRNQRGATAVMPYSARARAGAPVAAPVAWRELDGI
DTAARWTIRDAGELATRAGSAALRGWGVADQILPDL
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atggctgatccgctcgaacgctataacgccaagcgcgatttcacccgcaccgccgagcct
gcggggacgttggcgcccggcaagggcaacagcttcatcgtgcagaagcatgacgcgacc
cggctccactgggacttccggctggaggtggatggggtgctcaaaagctgggcggtgacg
cgcggccccagcctggatcccgacgaaaagcggctggcggtgcggaccgaggatcatccg
ctctcttatgcgacgttcgaggggacgattccggcgggcgaatatggcggcggcacggtg
atgctgtgggatcgcggcacctggtcaccggttgcgggcaagagtgcgaaggatctggaa
gacgggcatctccacttcatcctcgatggcgagcggatgaagggcgaatggctgcttgtc
cgcatgaagcccaggggcaaggaaaagcgcgagaactggctgctccgcaaggtcgccgac
gcccaggccggggggaccgacacgctgaccgatcaggcgctgaccagcgtgtcgaccggg
cggaccatggcgcagatcgccgaggggaaagcggcgaagccaaagtcgaccaacacaccg
aaggcgcggccgagcaaggcgaaaacgaaggccaaggcgaaagcgggcacgatgcccgaa
tttcagcccccggcgctctgcactttggtcgatcaggtcccggccggaaatggctgggtg
catgagatcaaatatgacggctaccgcgcgctgatcgcggtgggcgggggagaggcgcgg
gtcttcacccgcagcgggctggactggagcgataagtttcccggcatcgtcgcggcggcc
gccgatctgcccgtcgccagcgcgctgatcgacggagagatcgtcgcgttcaaggacggg
cggccggacttctcgacgctgaaggatgcgatcggcacgaccaagccgatgagcctgttc
gccttcgacctgctgtcgctggacggcgaggatgtaaccggcctgccactggtccagcgc
aaggaacggctgcgcggggtcgtccccaagggcgacgaggttatccagttcgccgagcac
atcaccggctcgggcgaggcgctcttcgacaagctctgcgccgaggggctggaaggcgtc
gtgtccaaacgtgccgacagtcgttacccatcggcgcgcagccgcgactggctgaagatc
aaatgcctgaagcggcaggagttcgtgatcgtcggatggctcccttccgacaaggcgcgg
cgggggttgaagtcgctgctgctgggcgtgaaccgcgacggcgagctggcctatgtcggc
aaggtcggcaccggttttacgcaagaccgcatggccgagttgcgcacgttgctcgacgcc
cgcacccgcaagaccgcccgcgtcgaggcgccgcgcgcgatggtacgcggtgcgaaatgg
gtgcgccccgatctggtcgccgagatcgcctttaccgagacgacgcccgacggcctgctc
cgccatcccagcttcatcggccttcgcgaggacaagcccgctgatcaagtggtcgaggaa
cgccccgcccccggaccctccgccaaggacagcgatatcgccatcacccatcccgagcgg
gtgatctttcccgatagcgatctgaccaagggcgacctcgccgattatgtcgccaccatc
gctccgctgatgctcccctgggtcgcgcgccgaccggtcagcctggtccgctgtccgcaa
ggtcgggcgcgggcgtgtttcttccagaagcatgacgcgggcagtttcgggccgcatgtc
cactcggtgccgatccgggaaaaggacggcggcaccgaaccctatctctatgtcgaggac
gcggagggcctgcgcgcctgtatccagatgggctcgatcgagtttcatggctggggatcg
tccatcgccacgctggaacagcccgaccggatgatcttcgacctcgatcccgatccgtcc
gtgaccttcgccgatgtgaagcgcgccgcggtgcatatccatgaccagctcgccgaattg
gggctgaccagctttgcgatgctgtcgggcggcaagggtgtgcatgtcgtcgtgccgctg
accccggatgcgaagtggcccgccgtgtcggacttcgccgaacgcttcgccaaagccttg
gcacaaggcgatcccgaccgtttcgtcgcggtggcgaccaaggccaaacgcaagggccgc
atcttcatcgactggctgcgcaaccagcgcggcgcgaccgccgtcatgccctattcggcc
cgcgcgcgggcgggggcgccggtcgccgcgccggtggcgtggcgcgagctggacggcatc
gacacggcggcgcgctggacgatccgcgatgccggagaactggcgacgcgcgcgggcagc
gcggccttgcgcggctggggtgtggcggatcaaatcctgcccgatctctaa
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